Variant report

Variant rs2600342
Chromosome Location chr12:11261967-11261968
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:11205800-11269200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr12:11237200-11262200 Weak transcription Duodenum Smooth Muscle Duodenum
3 chr12:11239200-11283600 Weak transcription Fetal Thymus thymus
4 chr12:11245200-11286000 Weak transcription Ovary ovary
5 chr12:11251000-11276200 Weak transcription iPS-18 Cell Line embryonic stem cell
6 chr12:11251200-11269800 Weak transcription H1 Cell Line embryonic stem cell
7 chr12:11251800-11263200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
8 chr12:11252200-11274800 Weak transcription HSMM muscle
9 chr12:11253000-11265200 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr12:11253000-11283200 Weak transcription Skeletal Muscle Female skeletal muscle
11 chr12:11254000-11262600 Weak transcription HUES64 Cell Line embryonic stem cell
12 chr12:11254000-11267000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr12:11257200-11265000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
14 chr12:11257400-11273000 Weak transcription Fetal Heart heart
15 chr12:11257800-11262600 Weak transcription Adipose Nuclei Adipose
16 chr12:11258600-11272800 Weak transcription Muscle Satellite Cultured Cells --
17 chr12:11258600-11273000 Weak transcription Osteobl bone
18 chr12:11258800-11272400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr12:11259400-11262000 Weak transcription Placenta Amnion Placenta Amnion
20 chr12:11259400-11262000 ZNF genes & repeats GM12878-XiMat blood
21 chr12:11259400-11262200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr12:11259400-11262200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr12:11259600-11262200 Strong transcription Fetal Muscle Trunk muscle
24 chr12:11259800-11262600 ZNF genes & repeats Primary hematopoietic stem cells blood
25 chr12:11259800-11264200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr12:11259800-11265000 Weak transcription HepG2 liver
27 chr12:11260000-11262000 Weak transcription Pancreas Pancrea
28 chr12:11260000-11262200 Strong transcription A549 lung
29 chr12:11260000-11263200 Weak transcription HUES6 Cell Line embryonic stem cell
30 chr12:11260000-11272800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
31 chr12:11260000-11297000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr12:11260200-11264200 Weak transcription iPS-20b Cell Line embryonic stem cell
33 chr12:11260200-11264400 Weak transcription Monocytes-CD14+_RO01746 blood
34 chr12:11260200-11271800 Weak transcription HUES48 Cell Line embryonic stem cell
35 chr12:11260600-11270000 Weak transcription Fetal Kidney kidney
36 chr12:11260800-11262200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr12:11260800-11262200 Strong transcription Thymus Thymus
38 chr12:11260800-11263200 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
39 chr12:11261000-11262200 ZNF genes & repeats Fetal Intestine Small intestine
40 chr12:11261000-11262200 ZNF genes & repeats Fetal Stomach stomach
41 chr12:11261000-11263000 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
42 chr12:11261200-11262000 Enhancers Right Ventricle heart
43 chr12:11261200-11262200 Enhancers Primary Natural Killer cells fromperipheralblood blood
44 chr12:11261200-11262400 Enhancers Primary T helper cells fromperipheralblood blood
45 chr12:11261200-11262600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
46 chr12:11261200-11264000 ZNF genes & repeats Fetal Muscle Leg muscle
47 chr12:11261400-11262200 Strong transcription Fetal Adrenal Gland Adrenal Gland
48 chr12:11261400-11262200 Enhancers Left Ventricle heart
49 chr12:11261400-11262600 Enhancers Primary B cells from peripheral blood blood
50 chr12:11261400-11262600 Enhancers Primary T cells fromperipheralblood blood

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