Variant report

Variant	rs260161
Chromosome Location	chr13:67622929-67622930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:67620328..67623105-chr13:67624007..67626325,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1571393	1.00[ASW][hapmap]
rs166336	1.00[YRI][hapmap]
rs17082010	1.00[EUR][1000 genomes]
rs17082013	1.00[EUR][1000 genomes]
rs17082027	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs181988	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2149321	1.00[AMR][1000 genomes]
rs260141	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs260144	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs260146	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs260149	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs260154	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs260157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3920646	1.00[ASW][hapmap]
rs60336902	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61266462	1.00[EUR][1000 genomes]
rs6562481	1.00[AMR][1000 genomes]
rs73505314	1.00[EUR][1000 genomes]
rs73505336	1.00[EUR][1000 genomes]
rs73505345	1.00[EUR][1000 genomes]
rs73505347	1.00[EUR][1000 genomes]
rs73507342	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74093687	1.00[EUR][1000 genomes]
rs7983779	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530605	chr13:67126136-67697306	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv832640	chr13:67460304-67635966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv428604	chr13:67480426-67645030	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv900414	chr13:67515590-67701341	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045093	chr13:67517932-67693875	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv541821	chr13:67517932-67693875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1037217	chr13:67589937-67728156	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv1039600	chr13:67593961-67726047	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv541823	chr13:67593961-67726047	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67616600-67625400	Enhancers	Brain Cingulate Gyrus	brain
2	chr13:67618400-67623800	Enhancers	Brain Anterior Caudate	brain
3	chr13:67619800-67625000	Enhancers	Fetal Lung	lung
4	chr13:67621000-67626600	Enhancers	Brain Hippocampus Middle	brain
5	chr13:67621200-67623400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr13:67621200-67625400	Enhancers	Brain Substantia Nigra	brain
7	chr13:67621600-67623000	Enhancers	Fetal Brain Female	brain
8	chr13:67621800-67623000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr13:67621800-67623200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr13:67621800-67623800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:67622000-67623000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr13:67622000-67623000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr13:67622000-67623600	Enhancers	A549	lung
14	chr13:67622000-67623800	Enhancers	NH-A	brain
15	chr13:67622200-67623000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:67622200-67623000	Enhancers	Primary B cells from peripheral blood	blood
17	chr13:67622200-67623000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr13:67622200-67623000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr13:67622200-67623000	Enhancers	HUVEC	blood vessel
20	chr13:67622200-67623000	Enhancers	K562	blood
21	chr13:67622200-67623200	Enhancers	Primary T cells from cord blood	blood
22	chr13:67622200-67623200	Enhancers	Fetal Stomach	stomach
23	chr13:67622200-67623200	Enhancers	Thymus	Thymus
24	chr13:67622200-67623800	Enhancers	Fetal Thymus	thymus
25	chr13:67622200-67623800	Enhancers	Stomach Mucosa	stomach
26	chr13:67622200-67624800	Enhancers	Fetal Kidney	kidney
27	chr13:67622200-67625400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr13:67622400-67623000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr13:67622400-67623000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr13:67622400-67623000	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr13:67622400-67623000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr13:67622400-67623000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr13:67622400-67623000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr13:67622400-67623000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr13:67622400-67623000	Enhancers	Pancreas	Pancrea
36	chr13:67622400-67623000	Enhancers	Right Atrium	heart
37	chr13:67622400-67623200	Enhancers	HSMMtube	muscle
38	chr13:67622400-67623400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr13:67622400-67631400	Weak transcription	Psoas Muscle	Psoas
40	chr13:67622600-67623000	Enhancers	H1 Cell Line	embryonic stem cell
41	chr13:67622600-67623000	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr13:67622600-67623000	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr13:67622600-67623000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr13:67622600-67623000	Enhancers	Adipose Nuclei	Adipose
45	chr13:67622600-67623000	Flanking Active TSS	Brain Angular Gyrus	brain
46	chr13:67622600-67623000	Enhancers	Fetal Brain Male	brain
47	chr13:67622600-67623200	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr13:67622600-67623200	Flanking Active TSS	Osteobl	bone
49	chr13:67622600-67623600	Enhancers	Dnd41	blood
50	chr13:67622600-67623800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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