Variant report

Variant	rs260168
Chromosome Location	chr13:67627738-67627739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1022866	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10492596	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10492597	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11148737	0.82[ASN][1000 genomes]
rs11148738	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11617670	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1323911	1.00[JPT][hapmap]
rs1323917	1.00[JPT][hapmap]
rs1323923	1.00[JPT][hapmap]
rs1408170	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1408171	0.86[ASN][1000 genomes]
rs149448	0.82[ASN][1000 genomes]
rs155009	0.83[ASN][1000 genomes]
rs155010	1.00[CHD][hapmap];0.91[GIH][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap];0.83[ASN][1000 genomes]
rs17195259	0.82[ASN][1000 genomes]
rs17195266	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17517438	1.00[CHD][hapmap]
rs17587572	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17589427	1.00[CHD][hapmap]
rs17791001	1.00[JPT][hapmap]
rs17791056	1.00[JPT][hapmap]
rs1924309	1.00[JPT][hapmap]
rs1924310	1.00[JPT][hapmap]
rs1927812	1.00[CHD][hapmap]
rs260131	0.86[ASN][1000 genomes]
rs260139	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs260140	1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs260145	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs260160	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs260162	0.82[ASN][1000 genomes]
rs260164	0.82[ASN][1000 genomes]
rs260165	0.82[ASN][1000 genomes]
rs2875517	1.00[CHD][hapmap]
rs56915128	0.86[ASN][1000 genomes]
rs61959241	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61959242	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61959248	0.82[ASN][1000 genomes]
rs61959249	0.82[ASN][1000 genomes]
rs61959360	0.86[ASN][1000 genomes]
rs61959362	0.82[ASN][1000 genomes]
rs61961771	0.86[ASN][1000 genomes]
rs61961774	0.86[ASN][1000 genomes]
rs7317342	0.82[GIH][hapmap]
rs7330064	1.00[CHD][hapmap]
rs7981987	1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7987190	1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7987478	1.00[JPT][hapmap]
rs7989912	0.83[ASN][1000 genomes]
rs7995254	0.82[GIH][hapmap]
rs7999949	1.00[CHD][hapmap]
rs9317632	1.00[JPT][hapmap]
rs9317633	1.00[JPT][hapmap]
rs9317637	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9529158	1.00[JPT][hapmap]
rs9529163	1.00[JPT][hapmap]
rs9529170	1.00[JPT][hapmap]
rs9529174	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9529180	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9529181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9529185	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs9529190	1.00[CHD][hapmap]
rs9540949	1.00[JPT][hapmap]
rs9540952	1.00[JPT][hapmap]
rs9540953	1.00[JPT][hapmap]
rs9540954	1.00[JPT][hapmap]
rs9540960	1.00[JPT][hapmap]
rs9540967	1.00[JPT][hapmap]
rs9540970	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9540971	1.00[JPT][hapmap]
rs9540979	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9540980	0.82[ASN][1000 genomes]
rs9540982	0.86[ASN][1000 genomes]
rs9540983	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9540984	0.86[ASN][1000 genomes]
rs9540987	0.86[ASN][1000 genomes]
rs9540988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9540989	0.86[ASN][1000 genomes]
rs9540993	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9540995	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9540996	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9541012	1.00[CHD][hapmap]
rs9541013	1.00[CHD][hapmap]
rs9571705	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530605	chr13:67126136-67697306	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv832640	chr13:67460304-67635966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv428604	chr13:67480426-67645030	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv900414	chr13:67515590-67701341	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045093	chr13:67517932-67693875	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv541821	chr13:67517932-67693875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1037217	chr13:67589937-67728156	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv1039600	chr13:67593961-67726047	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv541823	chr13:67593961-67726047	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67622400-67631400	Weak transcription	Psoas Muscle	Psoas
2	chr13:67623200-67636000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr13:67625400-67628800	Weak transcription	Brain Substantia Nigra	brain
4	chr13:67626400-67628200	Enhancers	Brain Angular Gyrus	brain
5	chr13:67626400-67635400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:67626600-67631400	Weak transcription	Brain Hippocampus Middle	brain
7	chr13:67626800-67630400	Weak transcription	Brain Anterior Caudate	brain
8	chr13:67626800-67636000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:67627000-67627800	Enhancers	A549	lung
10	chr13:67627400-67628200	Enhancers	Brain Cingulate Gyrus	brain
11	chr13:67627600-67632400	Weak transcription	Brain Inferior Temporal Lobe	brain

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