Variant report

Variant	rs260545
Chromosome Location	chr15:29973725-29973726
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10775231	1.00[JPT][hapmap]
rs11636849	1.00[JPT][hapmap]
rs1585900	1.00[JPT][hapmap]
rs260541	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs260543	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6495945	1.00[JPT][hapmap]
rs7168919	1.00[JPT][hapmap]
rs7170406	1.00[JPT][hapmap]
rs785446	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456736	chr15:29327352-30208654	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv568675	chr15:29327352-30208654	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv903747	chr15:29361126-30008977	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv995038	chr15:29744279-30366124	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1038495	chr15:29825859-30351687	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv542293	chr15:29825859-30351687	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv832944	chr15:29861062-30082057	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv832945	chr15:29932599-30123721	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:29968000-29977400	Weak transcription	NHLF	lung
2	chr15:29968200-29974200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:29968600-29978800	Weak transcription	Liver	Liver
4	chr15:29969200-29992000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:29969600-29975000	Weak transcription	Brain Germinal Matrix	brain
6	chr15:29969600-29975000	Weak transcription	Fetal Stomach	stomach
7	chr15:29969600-29977400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:29969800-29975000	Weak transcription	NH-A	brain
9	chr15:29970000-29975000	Weak transcription	Osteobl	bone
10	chr15:29970000-29975400	Weak transcription	HSMM	muscle
11	chr15:29970200-29977400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr15:29970400-29977600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:29970600-29980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:29970600-29980600	Weak transcription	Brain Substantia Nigra	brain
15	chr15:29971400-29977200	Weak transcription	Stomach Mucosa	stomach
16	chr15:29971400-29977400	Weak transcription	Pancreas	Pancrea
17	chr15:29971400-29977600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr15:29971800-29977600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:29971800-29979000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:29972600-29973800	Strong transcription	A549	lung
21	chr15:29972600-29979000	Weak transcription	Fetal Intestine Large	intestine
22	chr15:29972800-29989200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:29973200-29974400	Strong transcription	Fetal Intestine Small	intestine
24	chr15:29973200-29975000	Weak transcription	HUVEC	blood vessel
25	chr15:29973600-29989600	Weak transcription	Fetal Muscle Leg	muscle

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