Variant report

Variant	rs2609633
Chromosome Location	chr8:34207992-34207993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2168962	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2590469	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2609620	0.97[ASN][1000 genomes]
rs2719311	0.85[EUR][1000 genomes]
rs2719320	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2719321	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2719322	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28404543	0.90[ASN][1000 genomes]
rs2953926	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2953929	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2953934	0.97[ASN][1000 genomes]
rs2953935	0.97[ASN][1000 genomes]
rs2959323	0.97[ASN][1000 genomes]
rs2959325	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2978837	0.97[ASN][1000 genomes]
rs4739544	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6987252	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610931	chr8:34176474-34226215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34206800-34210200	Weak transcription	Fetal Intestine Small	intestine
2	chr8:34207600-34210200	Weak transcription	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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