Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10003344	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11728684	0.90[ASN][1000 genomes]
rs13131341	0.92[EUR][1000 genomes]
rs1365624	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1820521	0.91[EUR][1000 genomes]
rs1820522	0.91[EUR][1000 genomes]
rs1834693	0.93[EUR][1000 genomes]
rs2256669	0.90[EUR][1000 genomes]
rs2332893	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2555648	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2555665	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2612653	0.90[ASN][1000 genomes]
rs2612671	0.94[EUR][1000 genomes]
rs2612676	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2612677	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4147099	0.92[EUR][1000 genomes]
rs4695933	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73012605	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7656557	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9997598	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525487	chr4:175400104-175470867	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv881376	chr4:175466101-175513812	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175461400-175474200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:175465600-175468800	Enhancers	Liver	Liver
3	chr4:175466600-175484600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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