Variant report

Variant	rs2612671
Chromosome Location	chr4:175457667-175457668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10003344	0.85[EUR][1000 genomes]
rs13131341	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1365624	0.85[EUR][1000 genomes]
rs1820521	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1820522	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1834693	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2256669	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2332893	0.85[EUR][1000 genomes]
rs2555648	0.84[EUR][1000 genomes]
rs2555665	0.84[EUR][1000 genomes]
rs2612664	0.94[EUR][1000 genomes]
rs2612676	0.94[EUR][1000 genomes]
rs2612677	0.86[EUR][1000 genomes]
rs4147099	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4695933	0.85[EUR][1000 genomes]
rs7656557	0.85[EUR][1000 genomes]
rs9997598	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525487	chr4:175400104-175470867	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175447000-175459000	Weak transcription	A549	lung
2	chr4:175447200-175459200	Weak transcription	Stomach Mucosa	stomach
3	chr4:175449800-175460000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:175452200-175459000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:175454800-175458800	Weak transcription	Liver	Liver
6	chr4:175457600-175457800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:175457600-175458000	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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