Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:175406770..175409380-chr4:175409383..175411146,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17060612	1.00[EUR][1000 genomes]
rs2247362	1.00[EUR][1000 genomes]
rs2251807	1.00[EUR][1000 genomes]
rs2253170	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2253270	1.00[EUR][1000 genomes]
rs2254225	1.00[EUR][1000 genomes]
rs2254350	1.00[EUR][1000 genomes]
rs2255737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2555630	1.00[EUR][1000 genomes]
rs2555631	1.00[EUR][1000 genomes]
rs2555661	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2555668	1.00[EUR][1000 genomes]
rs2612657	1.00[EUR][1000 genomes]
rs2612660	1.00[EUR][1000 genomes]
rs2612661	1.00[EUR][1000 genomes]
rs2612678	1.00[EUR][1000 genomes]
rs28539757	1.00[EUR][1000 genomes]
rs3101254	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45479098	1.00[AMR][1000 genomes]
rs45509091	1.00[EUR][1000 genomes]
rs45525332	1.00[EUR][1000 genomes]
rs45527531	1.00[EUR][1000 genomes]
rs45557833	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45604244	1.00[EUR][1000 genomes]
rs56812046	1.00[EUR][1000 genomes]
rs6825010	1.00[EUR][1000 genomes]
rs72997311	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525487	chr4:175400104-175470867	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv881299	chr4:175403673-175415442	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175396000-175442800	Weak transcription	Esophagus	oesophagus
2	chr4:175406800-175412800	Weak transcription	Liver	Liver
3	chr4:175406800-175412800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:175406800-175415200	Weak transcription	Fetal Intestine Large	intestine
5	chr4:175406800-175415800	Weak transcription	Fetal Intestine Small	intestine
6	chr4:175407000-175410600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:175407000-175415000	Weak transcription	Primary T cells from cord blood	blood
8	chr4:175408200-175411600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr4:175408600-175410200	Weak transcription	A549	lung

Quick Search: