Variant report

Variant	rs262007
Chromosome Location	chr5:177980194-177980195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs171889	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs185493	0.84[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs262010	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262012	0.91[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs262017	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs262062	0.81[JPT][hapmap]
rs262071	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs566974	0.83[CHB][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs708131	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv883210	chr5:177771925-177980792	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv462570	chr5:177860454-178010145	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv600423	chr5:177860454-178010145	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv883214	chr5:177876309-178047217	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv883215	chr5:177961860-177980792	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177974400-177986200	Weak transcription	Right Atrium	heart
2	chr5:177974600-177982400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:177975000-177982000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:177975400-177982400	Weak transcription	Right Ventricle	heart
5	chr5:177975600-177980200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:177975600-177980200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr5:177975800-177980600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:177978800-177982000	Weak transcription	Fetal Heart	heart
9	chr5:177979000-177981400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr5:177979200-177981600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:177979200-177981600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:177979400-177981600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:177979400-177982400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr5:177980000-177980400	Enhancers	K562	blood
15	chr5:177980000-177980600	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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