Variant report

Variant	rs262026
Chromosome Location	chr5:178015407-178015408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs262022	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs262025	1.00[AMR][1000 genomes]
rs262031	1.00[AMR][1000 genomes]
rs262032	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs262034	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs262035	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs262043	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs262046	1.00[AMR][1000 genomes]
rs262049	1.00[AMR][1000 genomes]
rs262050	1.00[AMR][1000 genomes]
rs262058	1.00[AMR][1000 genomes]
rs436907	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6867990	1.00[AMR][1000 genomes]
rs6873445	1.00[AMR][1000 genomes]
rs73350300	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv883214	chr5:177876309-178047217	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv883216	chr5:178002325-178025087	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178012800-178016600	Weak transcription	Right Atrium	heart
2	chr5:178012800-178016800	Weak transcription	Gastric	stomach
3	chr5:178013200-178015600	Bivalent Enhancer	Fetal Lung	lung
4	chr5:178013200-178016000	Weak transcription	Pancreas	Pancrea
5	chr5:178013800-178015600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:178014200-178016600	Bivalent Enhancer	Fetal Heart	heart
7	chr5:178014400-178015800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:178014600-178015800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr5:178014600-178015800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
10	chr5:178014600-178018000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr5:178014800-178015600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
12	chr5:178014800-178015600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr5:178014800-178015800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
14	chr5:178014800-178015800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr5:178014800-178015800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr5:178014800-178015800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr5:178014800-178016000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
18	chr5:178014800-178016200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
19	chr5:178014800-178016600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr5:178015000-178015800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr5:178015000-178015800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr5:178015000-178015800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:178015000-178015800	Weak transcription	Right Ventricle	heart
24	chr5:178015000-178016000	Bivalent Enhancer	Fetal Stomach	stomach
25	chr5:178015000-178016600	Bivalent Enhancer	Fetal Muscle Leg	muscle
26	chr5:178015000-178016600	Enhancers	Left Ventricle	heart
27	chr5:178015200-178016400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
28	chr5:178015400-178015600	Bivalent Enhancer	Fetal Intestine Large	intestine
29	chr5:178015400-178015800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell

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