Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1525354	0.82[MEX][hapmap];0.83[TSI][hapmap]
rs1525355	1.00[CHB][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs1525357	1.00[CHB][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs1681934	0.81[ASN][1000 genomes]
rs1711906	1.00[CHB][hapmap]
rs1711912	0.83[TSI][hapmap]
rs1723499	1.00[CHB][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs1723500	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1723503	1.00[CHB][hapmap]
rs1723527	1.00[CHB][hapmap]
rs1723531	0.83[TSI][hapmap]
rs17396843	0.87[YRI][hapmap]
rs1741802	0.82[AMR][1000 genomes]
rs1741813	1.00[CHB][hapmap]
rs1779757	0.83[TSI][hapmap]
rs1779758	0.83[TSI][hapmap]
rs1857565	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs2005098	1.00[CHB][hapmap]
rs2622291	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2627797	0.89[ASW][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.94[YRI][hapmap];0.81[ASN][1000 genomes]
rs2677023	0.82[MEX][hapmap]
rs2677024	0.82[MEX][hapmap];0.83[TSI][hapmap]
rs2677027	1.00[CHB][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs2753073	1.00[CHB][hapmap]
rs2758240	0.87[ASN][1000 genomes]
rs2800019	0.82[EUR][1000 genomes]
rs2800024	1.00[CHB][hapmap]
rs2800025	1.00[CHB][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs2800029	0.90[AMR][1000 genomes]
rs56823218	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64186600-64190000	Weak transcription	Psoas Muscle	Psoas
2	chr6:64186600-64195400	Weak transcription	Hela-S3	cervix
3	chr6:64188600-64189800	Weak transcription	Liver	Liver
4	chr6:64189000-64190000	Weak transcription	NHEK	skin
5	chr6:64189000-64190400	Enhancers	A549	lung
6	chr6:64189200-64190200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:64189400-64189800	Weak transcription	Fetal Intestine Small	intestine
8	chr6:64189400-64189800	Weak transcription	HepG2	liver

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