Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1608812	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1628449	0.83[ASN][1000 genomes]
rs1631333	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1711919	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1723498	0.87[ASN][1000 genomes]
rs1741802	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1779745	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1779749	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1857565	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2622277	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2622306	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2622308	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2753064	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2753065	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2800019	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2800020	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2800021	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2800024	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2800025	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2800029	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs824388	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs860349	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64158000-64168200	Enhancers	HepG2	liver
2	chr6:64158400-64168400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:64162400-64166400	Weak transcription	Pancreas	Pancrea
4	chr6:64162400-64166800	Weak transcription	Stomach Mucosa	stomach
5	chr6:64162800-64167600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:64163000-64166400	Weak transcription	Fetal Intestine Large	intestine
7	chr6:64163400-64168600	Weak transcription	Hela-S3	cervix
8	chr6:64164200-64166400	Weak transcription	Liver	Liver
9	chr6:64164400-64166400	Weak transcription	A549	lung
10	chr6:64164800-64168600	Enhancers	Placenta	Placenta

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