Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr6:64263058-64263802	GM12878	blood:	n/a	chr6:64263679-64263688 chr6:64263672-64263686
2	NFIC	chr6:64263078-64263641	GM12878	blood:	n/a	n/a
3	STAT3	chr6:64263213-64263855	GM12878	blood:	n/a	chr6:64263671-64263683
4	MTA3	chr6:64263018-64263700	GM12878	blood:	n/a	n/a
5	ATF2	chr6:64262958-64263646	GM12878	blood:	n/a	n/a
6	EP300	chr6:64262974-64263701	GM12878	blood:	n/a	chr6:64263679-64263688 chr6:64263672-64263686
7	MXI1	chr6:64263112-64263688	GM12878	blood:	n/a	n/a
8	MEF2A	chr6:64263055-64263730	GM12878	blood:	n/a	chr6:64263342-64263353 chr6:64263367-64263382 chr6:64263362-64263383 chr6:64263338-64263353 chr6:64263369-64263378 chr6:64263369-64263380

No.	Distal block	Cell Line	Cell type
1	chr6:64262639..64265095-chr6:64279740..64282173,4	K562	blood:
2	chr6:64262639..64265095-chr6:64279740..64282173,2	K562	blood:
3	chr6:64263477..64268251-chr6:64280658..64284823,7	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10943869	0.85[CEU][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12523702	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs13191932	0.81[EUR][1000 genomes]
rs13200519	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13205487	0.87[EUR][1000 genomes]
rs13217662	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1322415	0.81[CEU][hapmap]
rs1322416	0.82[CEU][hapmap]
rs17396843	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs1744134	0.80[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1744143	0.87[ASN][1000 genomes]
rs1744153	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1779739	0.82[EUR][1000 genomes]
rs1779777	0.87[ASN][1000 genomes]
rs2025178	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2758244	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6916092	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71534831	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7753325	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9294269	0.82[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2622312	LGSN	cis	Whole Blood	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64262800-64265600	Genic enhancers	HepG2	liver
2	chr6:64263000-64263800	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr6:64263000-64264600	Enhancers	Fetal Brain Male	brain
4	chr6:64263000-64266800	Enhancers	A549	lung
5	chr6:64263000-64267000	Enhancers	Hela-S3	cervix
6	chr6:64263200-64264000	Enhancers	Liver	Liver
7	chr6:64263200-64264000	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr6:64263200-64264600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr6:64263400-64263800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:64263400-64264400	Weak transcription	Psoas Muscle	Psoas
11	chr6:64263600-64264200	Enhancers	GM12878-XiMat	blood
12	chr6:64263600-64264800	Weak transcription	NHEK	skin
13	chr6:64263600-64265200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:64263600-64265800	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr6:64263600-64270600	Weak transcription	Stomach Mucosa	stomach

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