Variant report

Variant	rs2624023
Chromosome Location	chr4:86656724-86656725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:86655699..86658214-chr4:86658665..86660389,2	K562	blood:
2	chr4:86655653..86657316-chr4:86662237..86664343,2	MCF-7	breast:
3	chr4:86651967..86654284-chr4:86654909..86657180,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1031987	0.93[ASN][1000 genomes]
rs11722392	0.99[ASN][1000 genomes]
rs11731040	0.80[ASN][1000 genomes]
rs12644984	1.00[ASN][1000 genomes]
rs12647014	0.94[ASN][1000 genomes]
rs12648692	0.80[ASN][1000 genomes]
rs12650494	0.93[ASN][1000 genomes]
rs13112493	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1482091	1.00[ASN][1000 genomes]
rs1482092	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1482095	0.99[ASN][1000 genomes]
rs17010599	0.80[ASN][1000 genomes]
rs17010697	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs343848	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs343852	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41477846	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4455406	0.97[ASN][1000 genomes]
rs56989679	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57065351	0.94[ASN][1000 genomes]
rs6531862	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6531863	0.99[ASN][1000 genomes]
rs6819529	0.84[EUR][1000 genomes]
rs6839040	1.00[ASN][1000 genomes]
rs6853196	0.99[ASN][1000 genomes]
rs6855390	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72656252	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72656285	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7661884	0.99[ASN][1000 genomes]
rs7675688	0.93[ASN][1000 genomes]
rs7682971	0.99[ASN][1000 genomes]
rs7685320	1.00[ASN][1000 genomes]
rs7697134	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	esv2763373	chr4:86655128-86673695	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86647200-86658200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:86647800-86662600	Weak transcription	Left Ventricle	heart
3	chr4:86647800-86662600	Weak transcription	Spleen	Spleen
4	chr4:86648400-86662600	Weak transcription	Pancreas	Pancrea
5	chr4:86650400-86662400	Weak transcription	Adipose Nuclei	Adipose
6	chr4:86653000-86658600	Enhancers	Primary B cells from peripheral blood	blood
7	chr4:86653800-86662200	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:86654600-86657000	Enhancers	Brain Hippocampus Middle	brain
9	chr4:86654600-86659000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr4:86655000-86657000	Enhancers	Brain Cingulate Gyrus	brain
11	chr4:86655000-86664200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:86655200-86659400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr4:86655400-86656800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:86655400-86657200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:86655400-86660000	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:86655600-86661600	Weak transcription	A549	lung
17	chr4:86655800-86658000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr4:86656000-86656800	Enhancers	Brain Angular Gyrus	brain
19	chr4:86656000-86656800	Enhancers	HSMMtube	muscle
20	chr4:86656000-86657200	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr4:86656200-86657400	Weak transcription	Primary B cells from cord blood	blood
22	chr4:86656200-86659800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:86656200-86660200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:86656400-86658200	Weak transcription	Brain Substantia Nigra	brain
25	chr4:86656400-86660000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr4:86656400-86661800	Weak transcription	HSMM	muscle
27	chr4:86656400-86661800	Weak transcription	HUVEC	blood vessel
28	chr4:86656600-86657000	Enhancers	Brain Anterior Caudate	brain
29	chr4:86656600-86658400	Weak transcription	NHDF-Ad	bronchial
30	chr4:86656600-86664000	Weak transcription	Hela-S3	cervix

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