Variant report

Variant	rs2624558
Chromosome Location	chr5:116773792-116773793
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10065401	0.86[CHB][hapmap]
rs1030461	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1366185	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2016802	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2245249	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs2263587	0.81[AMR][1000 genomes]
rs2560583	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2560586	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2560600	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2624463	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2624465	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116770600-116774600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr5:116772200-116773800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:116772800-116773800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr5:116772800-116773800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:116772800-116773800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:116772800-116773800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:116773000-116774000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:116773200-116773800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr5:116773200-116773800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:116773200-116774600	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:116773400-116773800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:116773600-116774000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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