Variant report

Variant	rs2627797
Chromosome Location	chr6:64279571-64279572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:64279486-64279676	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr6:64279467-64285844	HepG2	liver:	n/a	n/a
3	POLR2A	chr6:64279550-64280874	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64271187..64280436-chr6:64280675..64285943,14	K562	blood:
2	chr6:64229449..64231298-chr6:64279012..64281297,2	MCF-7	breast:

Variant related genes	Relation type
PTP4A1	TF binding region
ENSG00000112245	Chromatin interaction
ENSG00000266680	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13216525	0.81[YRI][hapmap]
rs1412864	0.81[YRI][hapmap]
rs1681934	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1723500	1.00[JPT][hapmap]
rs17396843	0.93[YRI][hapmap]
rs1857565	0.94[YRI][hapmap]
rs2622277	0.89[ASW][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.94[YRI][hapmap];0.81[ASN][1000 genomes]
rs2758240	0.91[AFR][1000 genomes]
rs3800489	0.81[YRI][hapmap]
rs3800490	0.86[LWK][hapmap];0.81[YRI][hapmap]
rs4710436	0.81[YRI][hapmap]
rs56823218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64276000-64281200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:64276200-64281200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:64276200-64281800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:64276400-64279800	Weak transcription	Pancreas	Pancrea
5	chr6:64276400-64280000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:64276400-64281400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:64276600-64279800	Weak transcription	HMEC	breast
8	chr6:64276600-64280200	Weak transcription	NHEK	skin
9	chr6:64276600-64281600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:64276600-64281600	Weak transcription	Placenta	Placenta
11	chr6:64276800-64279800	Enhancers	Hela-S3	cervix
12	chr6:64276800-64280200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:64276800-64281200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:64276800-64281200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:64276800-64281200	Weak transcription	Fetal Lung	lung
16	chr6:64276800-64281400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:64277000-64281000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:64277000-64281400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:64278200-64279600	Weak transcription	Fetal Intestine Large	intestine
20	chr6:64278200-64279600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr6:64278400-64279600	Weak transcription	Fetal Intestine Small	intestine
22	chr6:64278600-64281200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:64279000-64280200	Enhancers	A549	lung
24	chr6:64279000-64281200	Weak transcription	Stomach Mucosa	stomach
25	chr6:64279200-64280400	Enhancers	HepG2	liver
26	chr6:64279400-64280200	Enhancers	Liver	Liver

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