Variant report

Variant	rs2627836
Chromosome Location	chr4:143183149-143183150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143181530..143183042-chr4:143183086..143185031,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10029437	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1907109	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907113	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907117	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1907119	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1948323	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130685	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2172023	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2627812	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2627816	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2627817	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2627834	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2627835	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636632	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636635	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2636641	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636642	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636643	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636647	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636652	0.80[AMR][1000 genomes]
rs2636655	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636656	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636657	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636660	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636679	0.81[EUR][1000 genomes]
rs2636685	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3102436	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3102437	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3102438	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3102439	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3102443	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3102444	0.92[EUR][1000 genomes]
rs3102446	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113511	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113513	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3113515	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1027781	chr4:142943485-143306567	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830098	chr4:143050143-143234384	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv595604	chr4:143077401-143228914	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830099	chr4:143138257-143285055	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143135400-143184200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:143151000-143185000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr4:143160600-143185000	Weak transcription	HMEC	breast
4	chr4:143160600-143186400	Weak transcription	HSMM	muscle
5	chr4:143164600-143186000	Weak transcription	HSMMtube	muscle
6	chr4:143171000-143185600	Weak transcription	NHDF-Ad	bronchial
7	chr4:143171000-143185800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:143171000-143186200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:143173200-143184200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:143174400-143183400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:143174400-143183400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr4:143174400-143185000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr4:143174600-143186000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:143174600-143190200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:143179200-143186000	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:143179400-143186000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr4:143179600-143186000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:143179800-143191000	Weak transcription	Colonic Mucosa	Colon
19	chr4:143180200-143185000	Weak transcription	Psoas Muscle	Psoas
20	chr4:143181000-143183800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr4:143181200-143186400	Weak transcription	NHEK	skin
22	chr4:143181400-143187200	Weak transcription	Right Ventricle	heart
23	chr4:143181400-143191400	Weak transcription	Left Ventricle	heart
24	chr4:143181600-143186000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr4:143181600-143186000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr4:143181600-143186200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr4:143181600-143186200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:143181600-143195600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:143181800-143186000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr4:143181800-143186000	Weak transcription	Dnd41	blood
31	chr4:143181800-143186200	Weak transcription	Primary T cells from cord blood	blood
32	chr4:143182000-143183200	Enhancers	A549	lung
33	chr4:143182400-143183400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr4:143182400-143183600	Weak transcription	Fetal Heart	heart
35	chr4:143182400-143186200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr4:143182600-143183400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr4:143182600-143183400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
38	chr4:143182600-143185000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr4:143182600-143186400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr4:143182800-143183200	Active TSS	Monocytes-CD14+_RO01746	blood
41	chr4:143182800-143184200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr4:143182800-143185000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr4:143183000-143184000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:143183000-143186200	Weak transcription	Osteobl	bone
45	chr4:143183000-143204800	Weak transcription	Primary hematopoietic stem cells	blood

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