Variant report

Variant	rs2635103
Chromosome Location	chr6:74961024-74961025
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12202740	0.83[AMR][1000 genomes]
rs12205065	0.90[AMR][1000 genomes]
rs1319623	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1319624	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1387416	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1489375	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1615022	0.80[AMR][1000 genomes]
rs1615828	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1622964	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1686317	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1686319	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1760635	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1760636	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1760649	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1767853	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1767855	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1767858	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1767859	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1767861	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1768302	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1931283	0.89[AMR][1000 genomes]
rs2635112	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2635114	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2635116	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2781174	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2781209	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2781210	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2788972	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2788990	0.86[ASN][1000 genomes]
rs2788991	0.81[AMR][1000 genomes]
rs2788992	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886162	chr6:74903797-75006170	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886163	chr6:74944460-75006170	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv886164	chr6:74944460-75024313	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74958000-74961400	Enhancers	HUVEC	blood vessel
2	chr6:74958800-74961400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:74959000-74961200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:74959200-74961600	Enhancers	Fetal Intestine Large	intestine
5	chr6:74959400-74961200	Weak transcription	Fetal Intestine Small	intestine
6	chr6:74959600-74963400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:74960000-74961400	Enhancers	HepG2	liver
8	chr6:74960200-74961400	Enhancers	Fetal Stomach	stomach
9	chr6:74960400-74961200	Weak transcription	NHLF	lung
10	chr6:74960400-74961600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:74960400-74965600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:74960800-74961200	Weak transcription	NHEK	skin

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