Variant report

Variant	rs2635115
Chromosome Location	chr6:74968463-74968464
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10485384	0.86[ASN][1000 genomes]
rs1112039	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12205058	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1387416	0.84[AMR][1000 genomes]
rs1387417	0.86[ASN][1000 genomes]
rs1489375	0.84[AMR][1000 genomes]
rs1615022	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1686318	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16884555	0.86[ASN][1000 genomes]
rs1760658	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1767855	0.83[AMR][1000 genomes]
rs1767858	0.84[AMR][1000 genomes]
rs1767859	0.84[AMR][1000 genomes]
rs1767861	0.82[AMR][1000 genomes]
rs1953177	0.86[ASN][1000 genomes]
rs2352082	0.86[ASN][1000 genomes]
rs2635111	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2635114	0.84[AMR][1000 genomes]
rs2635116	0.84[AMR][1000 genomes]
rs2781175	0.84[AMR][1000 genomes]
rs2788992	0.84[AMR][1000 genomes]
rs4142493	0.80[ASN][1000 genomes]
rs4354109	0.86[ASN][1000 genomes]
rs4708140	0.85[ASN][1000 genomes]
rs6917462	0.80[ASN][1000 genomes]
rs763672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7758470	0.85[AMR][1000 genomes]
rs7773856	0.88[EUR][1000 genomes]
rs875303	0.80[ASN][1000 genomes]
rs9293961	0.86[ASN][1000 genomes]
rs9350532	0.86[ASN][1000 genomes]
rs9352088	0.87[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs9352089	0.87[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs9360767	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886162	chr6:74903797-75006170	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886163	chr6:74944460-75006170	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv886164	chr6:74944460-75024313	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74966800-74969000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:74967000-74969400	Weak transcription	Adipose Nuclei	Adipose
3	chr6:74968400-74968600	Enhancers	Fetal Stomach	stomach
4	chr6:74968400-74969200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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