Variant report

Variant	rs263669
Chromosome Location	chr2:211095542-211095543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10210462	1.00[MEX][hapmap]
rs11682724	1.00[MEX][hapmap]
rs11888495	1.00[MEX][hapmap]
rs12104563	0.83[LWK][hapmap]
rs13426138	1.00[MEX][hapmap]
rs2041654	1.00[MEX][hapmap]
rs2080157	1.00[AMR][1000 genomes]
rs2110315	0.89[YRI][hapmap];0.87[AMR][1000 genomes]
rs2539008	1.00[YRI][hapmap]
rs2539009	0.91[ASW][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs263670	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs263671	1.00[MEX][hapmap]
rs263672	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs263687	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs263692	0.83[ASW][hapmap];1.00[MEX][hapmap]
rs4673499	0.82[MKK][hapmap]
rs6435552	0.87[AMR][1000 genomes]
rs6761902	0.91[ASW][hapmap];0.80[LWK][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes]
rs7567227	1.00[MEX][hapmap];0.82[MKK][hapmap]
rs7573093	1.00[MEX][hapmap]
rs7586674	1.00[MEX][hapmap];0.85[MKK][hapmap]
rs7595390	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795338	chr2:210758078-211098113	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv1802749	chr2:210905194-211255611	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv1803710	chr2:211073376-211173763	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1012567	chr2:211087588-211315554	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211091000-211099800	Weak transcription	Aorta	Aorta
2	chr2:211091200-211096800	Enhancers	Liver	Liver
3	chr2:211092800-211100200	Weak transcription	Gastric	stomach
4	chr2:211095000-211095600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:211095000-211095600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:211095000-211095600	Enhancers	Placenta	Placenta
7	chr2:211095000-211095600	Enhancers	Pancreas	Pancrea
8	chr2:211095200-211095600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:211095200-211095600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:211095200-211095800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr2:211095200-211096400	Enhancers	Fetal Intestine Large	intestine
12	chr2:211095400-211095600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:211095400-211095600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr2:211095400-211095600	Enhancers	Colonic Mucosa	Colon
15	chr2:211095400-211095800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:211095400-211095800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr2:211095400-211096000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr2:211095400-211096000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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