Variant report

Variant	rs263671
Chromosome Location	chr2:211097624-211097625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPE-9	chr2:211097416-211098700	NONHSAT076676

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10210462	1.00[MEX][hapmap]
rs1111193	0.83[YRI][hapmap]
rs11682724	1.00[MEX][hapmap]
rs11888495	1.00[MEX][hapmap]
rs13426138	1.00[MEX][hapmap]
rs1990513	0.85[MKK][hapmap];0.83[YRI][hapmap]
rs2041654	1.00[MEX][hapmap]
rs2080158	0.85[MKK][hapmap];0.83[YRI][hapmap]
rs2192323	0.83[YRI][hapmap]
rs2539009	1.00[MEX][hapmap]
rs263672	1.00[MEX][hapmap]
rs263677	0.83[YRI][hapmap]
rs263684	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs263688	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs263692	1.00[MEX][hapmap]
rs2887881	0.83[YRI][hapmap]
rs4673502	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7567227	1.00[MEX][hapmap]
rs7573093	1.00[ASW][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap]
rs7586674	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795338	chr2:210758078-211098113	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv1802749	chr2:210905194-211255611	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv1803710	chr2:211073376-211173763	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1012567	chr2:211087588-211315554	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211091000-211099800	Weak transcription	Aorta	Aorta
2	chr2:211092800-211100200	Weak transcription	Gastric	stomach
3	chr2:211095600-211098400	Weak transcription	Pancreas	Pancrea

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