Variant report

Variant	rs263687
Chromosome Location	chr2:211048363-211048364
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2080157	1.00[AMR][1000 genomes]
rs2110315	0.87[AMR][1000 genomes]
rs263669	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs263670	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs263672	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6435552	0.87[AMR][1000 genomes]
rs6761902	0.87[AMR][1000 genomes]
rs7595390	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv1795338	chr2:210758078-211098113	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv1802749	chr2:210905194-211255611	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211037200-211049600	Weak transcription	Aorta	Aorta
2	chr2:211038000-211049200	Weak transcription	Liver	Liver
3	chr2:211043200-211053000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr2:211046800-211051800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:211046800-211059800	Weak transcription	Pancreas	Pancrea
6	chr2:211047400-211053000	Weak transcription	Thymus	Thymus
7	chr2:211048000-211048600	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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