Variant report

Variant	rs2647439
Chromosome Location	chr1:220128304-220128305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11118467	0.82[EUR][1000 genomes]
rs1694592	0.85[EUR][1000 genomes]
rs1694593	0.88[EUR][1000 genomes]
rs1694594	0.88[EUR][1000 genomes]
rs1694595	0.87[EUR][1000 genomes]
rs1694599	0.80[EUR][1000 genomes]
rs1694600	0.80[EUR][1000 genomes]
rs1776030	0.81[EUR][1000 genomes]
rs1776046	0.85[EUR][1000 genomes]
rs1776052	0.85[EUR][1000 genomes]
rs1874810	0.82[EUR][1000 genomes]
rs2275707	0.83[EUR][1000 genomes]
rs2647438	0.80[EUR][1000 genomes]
rs2647441	0.83[EUR][1000 genomes]
rs2647462	0.80[EUR][1000 genomes]
rs2795315	0.82[EUR][1000 genomes]
rs6663638	0.80[EUR][1000 genomes]
rs6663745	0.80[EUR][1000 genomes]
rs7525274	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427930	chr1:220120379-220333434	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	744 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220128200-220128400	Flanking Active TSS	HepG2	liver
2	chr1:220128200-220128800	Flanking Active TSS	Liver	Liver
3	chr1:220128200-220128800	Enhancers	Fetal Intestine Large	intestine
4	chr1:220128200-220128800	Enhancers	Fetal Intestine Small	intestine
5	chr1:220128200-220128800	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links