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Variant report
Variant
rs2653348
Chromosome Location
chr6:55139868-55139869
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
No data
No data
No data
No data
Extended variants information (count: 6 )
Associated traits (count: 1 )
rSNPs within LD-proxies of this variant (count:6)
rs_ID
r
2
[population]
rs1553332
0.83[GIH][hapmap];0.89[TSI][hapmap]
rs1910123
0.82[CEU][hapmap]
rs2134294
0.82[CEU][hapmap];0.83[GIH][hapmap];0.89[TSI][hapmap]
rs2653350
0.96[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs3800539
0.86[JPT][hapmap]
rs9367629
0.92[JPT][hapmap]
mRNA abundance (count:1)
SNP
Gene
Cis/trans
Tissue
Source
rs2653348
KIAA1586
cis
cerebellum
SCAN
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links