Variant report

Variant	rs2654754
Chromosome Location	chr3:113855796-113855797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10049226	1.00[EUR][1000 genomes]
rs10934253	1.00[EUR][1000 genomes]
rs10934262	1.00[JPT][hapmap]
rs11921500	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11929108	0.85[EUR][1000 genomes]
rs12330143	1.00[EUR][1000 genomes]
rs12485249	1.00[JPT][hapmap]
rs12490922	0.90[AFR][1000 genomes]
rs12639482	1.00[MEX][hapmap]
rs1354348	1.00[JPT][hapmap]
rs1466578	1.00[EUR][1000 genomes]
rs1486008	1.00[JPT][hapmap]
rs16822393	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1800827	1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2251177	1.00[MEX][hapmap]
rs2654762	1.00[MEX][hapmap]
rs2654763	1.00[JPT][hapmap]
rs28419745	1.00[EUR][1000 genomes]
rs324041	1.00[MEX][hapmap]
rs3732783	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3732791	1.00[JPT][hapmap]
rs4682534	1.00[JPT][hapmap]
rs57309847	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61595610	0.95[EUR][1000 genomes]
rs6786450	0.95[EUR][1000 genomes]
rs6806217	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs6808291	1.00[EUR][1000 genomes]
rs72942687	1.00[EUR][1000 genomes]
rs72944698	0.95[EUR][1000 genomes]
rs7619130	0.95[EUR][1000 genomes]
rs7629948	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9288991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288992	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9288993	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9681085	1.00[EUR][1000 genomes]
rs9682405	1.00[EUR][1000 genomes]
rs9811326	0.95[EUR][1000 genomes]
rs9824856	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828046	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9837524	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9859762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871472	0.95[EUR][1000 genomes]
rs9873053	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9874427	0.95[EUR][1000 genomes]
rs9878569	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877352	chr3:113744010-113870078	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv877353	chr3:113789029-113879562	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv948596	chr3:113852666-114434158	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv3447208	chr3:113853785-113995233	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113854600-113856600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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