Variant report

Variant	rs2660215
Chromosome Location	chr10:52751940-52751941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10761657	0.86[AFR][1000 genomes]
rs10822045	0.86[AFR][1000 genomes]
rs7093621	0.80[ASN][1000 genomes]
rs7905728	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831872	chr10:52663328-52818537	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52748600-52752400	Active TSS	Skeletal Muscle Male	skeletal muscle
2	chr10:52748600-52753800	Active TSS	Right Atrium	heart
3	chr10:52748600-52754400	Active TSS	Aorta	Aorta
4	chr10:52750000-52752600	Active TSS	Colonic Mucosa	Colon
5	chr10:52750000-52752600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
6	chr10:52750000-52752800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:52750000-52752800	Active TSS	Fetal Kidney	kidney
8	chr10:52750000-52753000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr10:52750000-52753200	Active TSS	Left Ventricle	heart
10	chr10:52750000-52753600	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr10:52750000-52753600	Active TSS	Psoas Muscle	Psoas
12	chr10:52750000-52754600	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr10:52750200-52752200	Active TSS	Brain Substantia Nigra	brain
14	chr10:52750200-52752600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
15	chr10:52750200-52752600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr10:52750200-52752600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
17	chr10:52750200-52752800	Active TSS	Pancreas	Pancrea
18	chr10:52750200-52753000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
19	chr10:52750200-52753000	Active TSS	Rectal Smooth Muscle	rectum
20	chr10:52750200-52753600	Active TSS	Lung	lung
21	chr10:52750200-52754000	Active TSS	Right Ventricle	heart
22	chr10:52750400-52752000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:52750400-52752000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:52750400-52752000	Active TSS	Fetal Heart	heart
25	chr10:52750400-52752200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
26	chr10:52750400-52752200	Active TSS	Duodenum Mucosa	Duodenum
27	chr10:52750400-52752200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
28	chr10:52750400-52752600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:52750400-52752600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:52750400-52752600	Active TSS	Small Intestine	intestine
31	chr10:52750400-52752800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:52750400-52752800	Active TSS	NHLF	lung
33	chr10:52750400-52753000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:52750600-52752000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
35	chr10:52750600-52752000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
36	chr10:52750600-52752000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:52750600-52752000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:52750600-52752000	Active TSS	Colon Smooth Muscle	Colon
39	chr10:52750600-52752000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
40	chr10:52750600-52752000	Bivalent/Poised TSS	Thymus	Thymus
41	chr10:52750600-52752000	Active TSS	NHDF-Ad	bronchial
42	chr10:52750600-52752200	Active TSS	Rectal Mucosa Donor 31	rectum
43	chr10:52750600-52752200	Active TSS	Osteobl	bone
44	chr10:52750600-52752400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr10:52750600-52752400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
46	chr10:52750600-52752800	Active TSS	NH-A	brain
47	chr10:52750600-52753600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
48	chr10:52750600-52754200	Active TSS	Fetal Lung	lung
49	chr10:52750800-52752000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr10:52750800-52752000	Flanking Active TSS	Liver	Liver

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