Variant report

Variant	rs2661528
Chromosome Location	chr4:48115734-48115735
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:48107035..48109587-chr4:48114590..48117554,2	K562	blood:

Variant related genes	Relation type
ENSG00000200269	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1003873	0.90[TSI][hapmap]
rs1159075	0.87[CHB][hapmap]
rs11942525	0.87[CHB][hapmap]
rs12640722	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1567217	0.85[TSI][hapmap]
rs16861044	0.87[CHB][hapmap]
rs16861106	0.87[CHB][hapmap]
rs16861108	0.87[CHB][hapmap]
rs2279965	0.85[TSI][hapmap]
rs2661525	0.81[AFR][1000 genomes]
rs2704400	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2704401	1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2704439	0.87[GIH][hapmap];0.85[TSI][hapmap]
rs3792619	0.81[CHB][hapmap]
rs3792623	0.82[JPT][hapmap]
rs6829390	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48106000-48129400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:48111800-48118600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:48113200-48116800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:48113600-48121800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
5	chr4:48114000-48115800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr4:48114000-48116800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr4:48114200-48116000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:48114200-48116400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:48114400-48116000	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr4:48114400-48116000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr4:48114400-48116800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:48114400-48116800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr4:48114400-48118200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr4:48114400-48118600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr4:48114400-48121600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:48114400-48123000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr4:48114600-48116000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr4:48114600-48118400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr4:48114800-48115800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:48114800-48115800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr4:48114800-48116400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr4:48114800-48116600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr4:48114800-48116800	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr4:48115000-48117000	Genic enhancers	Primary T cells from cord blood	blood
25	chr4:48115200-48117000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
26	chr4:48115400-48116600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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