Variant report

Variant	rs2662244
Chromosome Location	chr5:98047441-98047442
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10479243	0.93[ASN][1000 genomes]
rs149247	0.89[EUR][1000 genomes]
rs150822	0.85[EUR][1000 genomes]
rs159162	0.81[EUR][1000 genomes]
rs1592853	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs160710	0.88[EUR][1000 genomes]
rs160711	0.89[EUR][1000 genomes]
rs160713	0.85[EUR][1000 genomes]
rs160714	0.88[EUR][1000 genomes]
rs160716	0.86[EUR][1000 genomes]
rs160720	0.89[EUR][1000 genomes]
rs162675	0.84[EUR][1000 genomes]
rs176892	0.88[EUR][1000 genomes]
rs184143	0.89[EUR][1000 genomes]
rs2112421	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2545670	0.94[EUR][1000 genomes]
rs2545692	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2547957	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs294030	0.89[EUR][1000 genomes]
rs29770	0.85[CEU][hapmap]
rs29772	0.85[CEU][hapmap]
rs316506	0.87[EUR][1000 genomes]
rs316508	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs316510	0.88[EUR][1000 genomes]
rs373070	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs384863	0.87[EUR][1000 genomes]
rs392132	0.90[EUR][1000 genomes]
rs403888	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs408005	0.86[EUR][1000 genomes]
rs408400	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs426515	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs439509	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs442074	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs455749	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs455800	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs456244	0.85[EUR][1000 genomes]
rs456367	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs457215	0.85[EUR][1000 genomes]
rs458154	0.86[EUR][1000 genomes]
rs459865	0.86[EUR][1000 genomes]
rs460295	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs461258	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs461548	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs463309	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs463872	0.88[EUR][1000 genomes]
rs464246	0.88[EUR][1000 genomes]
rs465003	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs465427	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56727154	0.92[ASN][1000 genomes]
rs60756038	0.92[ASN][1000 genomes]
rs67595117	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs981566	0.82[EUR][1000 genomes]
rs981567	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032060	chr5:98022226-98093492	Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv537817	chr5:98022226-98093492	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98041600-98048800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:98047200-98048600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:98047400-98050800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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