Variant report
| Variant | rs2662431 |
|---|---|
| Chromosome Location | chr5:59303076-59303077 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10062369 | 1.00[EUR][1000 genomes] |
| rs10068304 | 0.84[JPT][hapmap] |
| rs10073437 | 0.84[JPT][hapmap] |
| rs10940654 | 0.84[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs10940655 | 0.90[JPT][hapmap] |
| rs1355099 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs1396473 | 0.85[CHB][hapmap];0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1396474 | 1.00[EUR][1000 genomes] |
| rs1508860 | 0.81[JPT][hapmap];1.00[EUR][1000 genomes] |
| rs1508865 | 1.00[EUR][1000 genomes] |
| rs1533019 | 0.84[JPT][hapmap] |
| rs2136201 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2409679 | 0.84[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2409682 | 0.84[JPT][hapmap] |
| rs2572065 | 1.00[EUR][1000 genomes] |
| rs2572068 | 0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2572069 | 0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2572070 | 0.92[JPT][hapmap] |
| rs2572071 | 0.84[JPT][hapmap] |
| rs2662430 | 0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2662433 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2916861 | 1.00[EUR][1000 genomes] |
| rs2916864 | 1.00[EUR][1000 genomes] |
| rs2916865 | 1.00[EUR][1000 genomes] |
| rs2916869 | 1.00[EUR][1000 genomes] |
| rs2937402 | 1.00[EUR][1000 genomes] |
| rs2962201 | 1.00[EUR][1000 genomes] |
| rs2962205 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2963806 | 0.84[JPT][hapmap];1.00[EUR][1000 genomes] |
| rs2963807 | 0.84[JPT][hapmap];1.00[EUR][1000 genomes] |
| rs2963808 | 1.00[EUR][1000 genomes] |
| rs2963810 | 1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2963811 | 1.00[EUR][1000 genomes] |
| rs2963813 | 1.00[EUR][1000 genomes] |
| rs2963815 | 1.00[EUR][1000 genomes] |
| rs2963816 | 1.00[CHB][hapmap];1.00[EUR][1000 genomes] |
| rs6876329 | 1.00[EUR][1000 genomes] |
| rs73761077 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018015 | chr5:58889470-59532667 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv537766 | chr5:58889470-59532667 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv534614 | chr5:58962510-59388525 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv1025856 | chr5:59188419-59928852 | Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 5 | nsv1027171 | chr5:59267959-59340525 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
