Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1436167	0.83[ASN][1000 genomes]
rs1436173	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1436174	0.89[ASN][1000 genomes]
rs1436176	0.94[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs1898190	0.94[ASN][1000 genomes]
rs1898191	0.94[ASN][1000 genomes]
rs2574875	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2574878	0.89[ASN][1000 genomes]
rs2574881	0.92[ASN][1000 genomes]
rs2662917	0.89[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2662922	0.91[ASN][1000 genomes]
rs2802560	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2802564	0.96[ASN][1000 genomes]
rs2802730	0.84[ASN][1000 genomes]
rs2802740	0.92[ASN][1000 genomes]
rs2802741	0.94[ASN][1000 genomes]
rs2802742	0.94[ASN][1000 genomes]
rs2802745	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2802747	0.89[ASN][1000 genomes]
rs2997477	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2997500	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3012183	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv1804780	chr1:224987113-224996034	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1811601	chr1:224987113-224996370	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1812046	chr1:224987113-224996370	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224988600-224991000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr1:224988600-224991400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr1:224988800-224991200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:224989600-224991400	Enhancers	Fetal Brain Male	brain
5	chr1:224990000-224990800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:224990000-224991000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:224990000-224991000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:224990000-224991000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:224990000-224991200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:224990600-224991000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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