Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1436167	0.89[ASN][1000 genomes]
rs1436173	0.85[ASN][1000 genomes]
rs1436174	0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1436176	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1898190	0.97[ASN][1000 genomes]
rs1898191	0.97[ASN][1000 genomes]
rs2574875	0.92[ASN][1000 genomes]
rs2574878	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2574881	0.99[ASN][1000 genomes]
rs2662909	0.91[ASN][1000 genomes]
rs2662922	0.98[ASN][1000 genomes]
rs2802560	0.84[ASN][1000 genomes]
rs2802561	0.83[ASN][1000 genomes]
rs2802564	0.94[ASN][1000 genomes]
rs2802730	0.91[ASN][1000 genomes]
rs2802740	0.99[ASN][1000 genomes]
rs2802741	0.97[ASN][1000 genomes]
rs2802742	0.97[ASN][1000 genomes]
rs2802745	0.92[ASN][1000 genomes]
rs2802747	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2997477	0.92[ASN][1000 genomes]
rs2997499	0.85[ASN][1000 genomes]
rs2997500	0.93[ASN][1000 genomes]
rs3012183	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224944800-224954800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:224948000-224956800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:224953000-224960800	Weak transcription	Pancreas	Pancrea

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