Variant report

Variant	rs2662927
Chromosome Location	chr1:224968641-224968642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224958593..224960248-chr1:224966899..224969772,2	MCF-7	breast:
2	chr1:224968181..224972472-chr1:224972623..224976659,4	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12097622	0.82[EUR][1000 genomes]
rs1316512	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1361923	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1436166	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892121	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1936632	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2016652	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2252950	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2574874	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2574876	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2574877	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2574879	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2574881	0.81[AMR][1000 genomes]
rs2662906	0.90[ASN][1000 genomes]
rs2662907	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2662922	0.81[AMR][1000 genomes]
rs2662923	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2662924	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2662925	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2662929	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2802552	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802556	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802558	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802559	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802561	0.83[AMR][1000 genomes]
rs2802562	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2802563	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2802744	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2997478	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2997499	0.82[AMR][1000 genomes]
rs2997501	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3012182	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3012184	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs56237431	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224958000-224972400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:224958800-224972000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:224966400-224969600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:224966800-224969000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:224966800-224969000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr1:224967000-224969000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:224967600-224969600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:224967600-224969600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:224967800-224969600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:224968000-224971000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:224968200-224968800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:224968200-224969000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr1:224968200-224969200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr1:224968400-224969800	Enhancers	Dnd41	blood
15	chr1:224968600-224968800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr1:224968600-224969000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
17	chr1:224968600-224969000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:224968600-224969000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:224968600-224969000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr1:224968600-224969200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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