Variant report

Variant	rs2663653
Chromosome Location	chr2:210507204-210507205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10165558	0.89[ASN][1000 genomes]
rs10169017	0.84[ASN][1000 genomes]
rs10172200	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs10189911	0.88[ASN][1000 genomes]
rs10193321	0.84[ASN][1000 genomes]
rs10196314	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs10196600	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs10198751	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10206817	0.84[ASN][1000 genomes]
rs10490021	0.85[JPT][hapmap]
rs10932305	0.85[JPT][hapmap]
rs11682692	0.81[JPT][hapmap]
rs11691800	0.80[ASN][1000 genomes]
rs11691894	0.80[ASN][1000 genomes]
rs11692075	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs12614031	0.85[JPT][hapmap]
rs12615372	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs12616589	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12618080	1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs12620654	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs12622979	0.86[ASN][1000 genomes]
rs12623404	0.88[CEU][hapmap]
rs12992342	0.86[ASN][1000 genomes]
rs13385585	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs13409134	0.80[ASN][1000 genomes]
rs13419929	0.84[JPT][hapmap]
rs13422521	0.82[ASN][1000 genomes]
rs1396779	0.80[ASN][1000 genomes]
rs1509465	0.90[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1509468	0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs1509469	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1509470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843329	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843351	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs16843354	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs16843360	0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs16843382	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs16843421	0.82[ASN][1000 genomes]
rs16843453	0.85[JPT][hapmap]
rs16843614	0.85[JPT][hapmap]
rs16843618	0.85[JPT][hapmap]
rs2048250	1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs2191910	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs2215625	0.83[ASN][1000 genomes]
rs2239552	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs2239553	0.85[JPT][hapmap]
rs2239672	0.85[JPT][hapmap]
rs2268042	0.85[JPT][hapmap]
rs2268044	0.85[JPT][hapmap]
rs2271252	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2286849	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs2286850	0.85[JPT][hapmap]
rs2300154	0.85[JPT][hapmap]
rs2366112	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2663647	0.82[ASN][1000 genomes]
rs2663648	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs2663649	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663650	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2663651	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663659	1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2710474	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2710475	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2710477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2710479	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2710480	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2710482	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2710486	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs28435689	0.80[ASN][1000 genomes]
rs28666486	0.80[ASN][1000 genomes]
rs28758270	0.80[ASN][1000 genomes]
rs34455059	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34850994	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35409969	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3738935	0.80[ASN][1000 genomes]
rs3754597	0.85[JPT][hapmap]
rs3768810	0.85[JPT][hapmap]
rs3768813	0.85[JPT][hapmap]
rs3768814	0.85[JPT][hapmap]
rs3768815	0.85[JPT][hapmap]
rs3768816	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs3768820	0.80[ASN][1000 genomes]
rs3768822	0.85[JPT][hapmap]
rs3768823	0.80[ASN][1000 genomes]
rs3768826	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs3768827	0.82[ASN][1000 genomes]
rs3768828	0.82[ASN][1000 genomes]
rs3768830	0.82[ASN][1000 genomes]
rs3768832	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs3768833	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs3768834	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs3768835	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs3820746	0.91[JPT][hapmap]
rs3820748	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs4673486	0.85[JPT][hapmap]
rs55911510	0.84[ASN][1000 genomes]
rs56775639	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56853570	0.87[ASN][1000 genomes]
rs57781584	0.81[ASN][1000 genomes]
rs58636345	0.87[ASN][1000 genomes]
rs58779755	0.82[ASN][1000 genomes]
rs59032380	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59155421	0.80[ASN][1000 genomes]
rs60138527	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60359169	0.86[ASN][1000 genomes]
rs60497472	0.81[ASN][1000 genomes]
rs6709925	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs6717554	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs6720659	0.85[JPT][hapmap]
rs6724834	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs6726061	0.90[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs6733319	0.90[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs6746029	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs723683	0.85[JPT][hapmap]
rs73071071	0.87[ASN][1000 genomes]
rs73071085	0.87[ASN][1000 genomes]
rs741006	0.85[JPT][hapmap]
rs741007	0.84[JPT][hapmap]
rs7567257	0.82[ASN][1000 genomes]
rs7593381	1.00[CEU][hapmap]
rs7594601	0.85[JPT][hapmap]
rs7596811	0.82[ASN][1000 genomes]
rs906831	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs9288410	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs962475	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs994862	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210494800-210517800	Weak transcription	Aorta	Aorta
2	chr2:210501000-210517800	Weak transcription	Fetal Brain Female	brain
3	chr2:210501200-210508000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:210501200-210516200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:210501800-210517800	Weak transcription	Brain Germinal Matrix	brain
6	chr2:210502800-210508000	Enhancers	HMEC	breast
7	chr2:210503000-210507400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:210503000-210508000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:210503000-210508400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:210503600-210517800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr2:210504600-210508200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:210504800-210508400	Enhancers	NHEK	skin
13	chr2:210505000-210508800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:210506600-210508000	Enhancers	Hela-S3	cervix
15	chr2:210506800-210507800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr2:210506800-210507800	Enhancers	A549	lung
17	chr2:210506800-210508000	Enhancers	HUVEC	blood vessel
18	chr2:210507000-210507400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr2:210507000-210507600	Enhancers	NHDF-Ad	bronchial
20	chr2:210507000-210507800	Enhancers	HSMM	muscle
21	chr2:210507000-210507800	Enhancers	NH-A	brain
22	chr2:210507000-210508000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr2:210507200-210508000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr2:210507200-210508400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr2:210507200-210511400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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