Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10740127	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10761774	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10822169	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10995555	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs12247631	0.87[AFR][1000 genomes]
rs12253781	0.87[AFR][1000 genomes]
rs12264657	0.92[YRI][hapmap]
rs2339670	0.85[AFR][1000 genomes]
rs2339672	0.86[CEU][hapmap]
rs2660199	0.94[ASN][1000 genomes]
rs2660200	0.94[ASN][1000 genomes]
rs2660201	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2660204	0.94[EUR][1000 genomes]
rs2666536	0.93[ASN][1000 genomes]
rs2666545	0.94[ASN][1000 genomes]
rs2666546	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4576762	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4935009	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4935218	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4935219	0.83[EUR][1000 genomes]
rs7073617	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7074981	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9414816	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831872	chr10:52663328-52818537	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52807600-52821000	Weak transcription	Aorta	Aorta

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