Variant report

Variant	rs2667280
Chromosome Location	chr8:49939606-49939607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12056899	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13277549	0.84[AMR][1000 genomes]
rs1588532	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1628843	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2667288	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2667291	0.84[EUR][1000 genomes]
rs341803	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs341811	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs341814	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34606575	0.84[AMR][1000 genomes]
rs62507216	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6472144	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs710894	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49935400-49941400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:49939000-49940200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:49939600-49941600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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