Variant report

Variant	rs2677022
Chromosome Location	chr6:64083285-64083286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:64078716..64081417-chr6:64082620..64086041,3	MCF-7	breast:
2	chr6:64080126..64083396-chr6:64281737..64284013,3	MCF-7	breast:
3	chr6:64082531..64084931-chr6:64282447..64284673,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266680	Chromatin interaction
ENSG00000112245	Chromatin interaction

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs1010057	1.00[EUR][1000 genomes]
rs1320419	1.00[EUR][1000 genomes]
rs1404779	1.00[EUR][1000 genomes]
rs1464865	1.00[EUR][1000 genomes]
rs1464866	0.95[EUR][1000 genomes]
rs1525354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525355	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1525357	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1608812	0.85[EUR][1000 genomes]
rs1619321	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1621804	1.00[CEU][hapmap];0.82[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1625205	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1628449	0.95[EUR][1000 genomes]
rs1631333	0.85[EUR][1000 genomes]
rs1711897	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1711898	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1711899	0.95[EUR][1000 genomes]
rs1711900	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1711901	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1711902	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1711903	0.95[EUR][1000 genomes]
rs1711904	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711906	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1711912	1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1711913	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1711914	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1711915	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1711918	1.00[EUR][1000 genomes]
rs1711919	0.85[EUR][1000 genomes]
rs1711927	1.00[EUR][1000 genomes]
rs1711928	1.00[EUR][1000 genomes]
rs1723497	1.00[EUR][1000 genomes]
rs1723498	1.00[EUR][1000 genomes]
rs1723499	1.00[EUR][1000 genomes]
rs1723500	1.00[EUR][1000 genomes]
rs1723502	0.90[EUR][1000 genomes]
rs1723503	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1723504	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1723506	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1723507	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1723508	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1723528	0.91[EUR][1000 genomes]
rs1723531	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1741780	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1741782	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1741783	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1741784	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1741786	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1741787	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1741788	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1741789	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1741790	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1741799	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1741802	0.85[EUR][1000 genomes]
rs1741805	1.00[EUR][1000 genomes]
rs1741810	1.00[EUR][1000 genomes]
rs1741813	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1779745	0.85[EUR][1000 genomes]
rs1779753	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1779756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1779757	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1779758	1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779760	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779761	0.84[AMR][1000 genomes]
rs1779762	0.88[AMR][1000 genomes]
rs1857565	0.85[EUR][1000 genomes]
rs1936532	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2005098	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2474908	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2622306	0.85[EUR][1000 genomes]
rs2622308	0.85[EUR][1000 genomes]
rs2677021	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2677023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677026	1.00[EUR][1000 genomes]
rs2677027	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2677028	1.00[EUR][1000 genomes]
rs2677029	1.00[EUR][1000 genomes]
rs2753064	0.85[EUR][1000 genomes]
rs2753065	0.85[EUR][1000 genomes]
rs2753069	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2753070	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753071	1.00[EUR][1000 genomes]
rs2753072	1.00[EUR][1000 genomes]
rs2753073	1.00[EUR][1000 genomes]
rs2753074	1.00[EUR][1000 genomes]
rs2800019	0.81[EUR][1000 genomes]
rs2800020	0.85[EUR][1000 genomes]
rs2800021	0.85[EUR][1000 genomes]
rs2800024	0.85[EUR][1000 genomes]
rs2800025	0.85[EUR][1000 genomes]
rs2800029	0.85[EUR][1000 genomes]
rs2800031	1.00[EUR][1000 genomes]
rs2800034	1.00[EUR][1000 genomes]
rs2800035	1.00[EUR][1000 genomes]
rs2800036	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4710426	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4710427	0.84[AMR][1000 genomes]
rs482904	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs59943612	0.85[EUR][1000 genomes]
rs60505637	0.85[EUR][1000 genomes]
rs61229307	0.85[EUR][1000 genomes]
rs6454169	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6933112	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs732948	1.00[EUR][1000 genomes]
rs7381742	0.95[EUR][1000 genomes]
rs7382020	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750785	1.00[EUR][1000 genomes]
rs7752941	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757686	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7758841	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7761720	0.90[EUR][1000 genomes]
rs7771677	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7771703	0.90[EUR][1000 genomes]
rs824372	1.00[JPT][hapmap]
rs824373	1.00[EUR][1000 genomes]
rs824374	1.00[EUR][1000 genomes]
rs824375	1.00[EUR][1000 genomes]
rs824376	1.00[EUR][1000 genomes]
rs824377	1.00[EUR][1000 genomes]
rs824378	1.00[EUR][1000 genomes]
rs824379	1.00[EUR][1000 genomes]
rs824380	1.00[EUR][1000 genomes]
rs824381	1.00[EUR][1000 genomes]
rs824383	1.00[EUR][1000 genomes]
rs824385	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824387	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824388	0.85[EUR][1000 genomes]
rs824390	1.00[EUR][1000 genomes]
rs824391	1.00[EUR][1000 genomes]
rs824392	1.00[EUR][1000 genomes]
rs824393	1.00[EUR][1000 genomes]
rs824394	1.00[EUR][1000 genomes]
rs860349	1.00[EUR][1000 genomes]
rs861113	1.00[EUR][1000 genomes]
rs865415	1.00[EUR][1000 genomes]
rs865416	1.00[EUR][1000 genomes]
rs940741	1.00[EUR][1000 genomes]
rs9767041	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1031548	chr6:64026862-64102045	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1030651	chr6:64028392-64102045	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64076400-64113600	Weak transcription	Placenta	Placenta
2	chr6:64082400-64091800	Weak transcription	HepG2	liver
3	chr6:64083200-64085000	Strong transcription	A549	lung

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