Variant report

Variant	rs2679561
Chromosome Location	chr3:34402968-34402969
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1191618	0.94[AFR][1000 genomes]
rs1191623	0.84[AFR][1000 genomes]
rs1406567	0.82[AFR][1000 genomes]
rs2950999	0.94[AFR][1000 genomes]
rs62249100	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34397400-34406600	Enhancers	Fetal Intestine Large	intestine
2	chr3:34399800-34403400	Weak transcription	Esophagus	oesophagus
3	chr3:34401400-34404600	Weak transcription	Fetal Intestine Small	intestine
4	chr3:34401800-34406400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:34402200-34403800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr3:34402600-34403200	Weak transcription	Primary T cells from cord blood	blood
7	chr3:34402600-34403400	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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