Variant report

Variant	rs2680252
Chromosome Location	chr3:81886144-81886145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2316138	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594550	0.83[YRI][hapmap]
rs2594554	1.00[AMR][1000 genomes]
rs2594555	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594556	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594557	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594559	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594561	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680241	1.00[AMR][1000 genomes]
rs2680243	0.83[YRI][hapmap]
rs2680244	0.83[YRI][hapmap]
rs2680248	0.83[YRI][hapmap]
rs2680253	1.00[AMR][1000 genomes]
rs2680255	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680256	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680266	0.83[YRI][hapmap]
rs2680269	0.83[YRI][hapmap]
rs2680270	0.83[YRI][hapmap]
rs2680279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680281	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2691074	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2691075	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2691076	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2691087	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81883400-81886600	Weak transcription	Dnd41	blood
2	chr3:81885200-81889000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:81885400-81886600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:81885400-81889600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:81885600-81886200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:81885800-81886200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:81885800-81886200	Enhancers	A549	lung
8	chr3:81885800-81886400	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr3:81885800-81888400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:81886000-81886200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr3:81886000-81886800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links