Variant report

Variant	rs2680253
Chromosome Location	chr3:81828815-81828816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2316138	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594550	1.00[YRI][hapmap]
rs2594554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594555	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594556	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594557	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594559	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594561	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594563	1.00[YRI][hapmap]
rs2680241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680243	1.00[YRI][hapmap]
rs2680244	1.00[YRI][hapmap]
rs2680248	1.00[YRI][hapmap]
rs2680250	1.00[YRI][hapmap]
rs2680252	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs2680255	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680256	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680266	1.00[YRI][hapmap]
rs2680269	1.00[YRI][hapmap]
rs2680270	1.00[YRI][hapmap]
rs2680279	1.00[AMR][1000 genomes]
rs2680281	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2691074	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2691075	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2691076	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2691087	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81828200-81830000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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