Variant report

Variant	rs2680260
Chromosome Location	chr3:81852388-81852389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:81807852..81811889-chr3:81850575..81853159,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114480	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1155277	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11925940	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12495343	0.88[EUR][1000 genomes]
rs12635671	0.87[EUR][1000 genomes]
rs1375086	1.00[JPT][hapmap]
rs1404297	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1829967	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1851917	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1973800	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1973801	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1973803	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1973804	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1997002	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2030708	0.82[AMR][1000 genomes]
rs2244294	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2252530	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2594547	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2594549	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2594551	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2594553	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2594558	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2594562	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2680245	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2680246	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2680257	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2680274	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2680277	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2680280	0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2691077	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2691078	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2691079	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2691080	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2691083	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2691084	0.83[EUR][1000 genomes]
rs2691085	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2691089	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2691093	0.89[EUR][1000 genomes]
rs4273393	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4479621	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6774438	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6803932	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7611902	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7653333	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs950904	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs957670	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9818090	1.00[JPT][hapmap]
rs9822266	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9832088	0.84[EUR][1000 genomes]
rs9860204	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9860805	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81851600-81852400	Enhancers	Fetal Heart	heart
2	chr3:81852200-81852400	Enhancers	Left Ventricle	heart

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