Variant report

Variant	rs2680279
Chromosome Location	chr3:81892163-81892164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2316138	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594554	1.00[AMR][1000 genomes]
rs2594555	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594556	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594557	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594559	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594561	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680241	1.00[AMR][1000 genomes]
rs2680252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680253	1.00[AMR][1000 genomes]
rs2680255	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680256	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680281	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2691074	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2691075	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2691076	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2691087	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81889200-81894800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:81889400-81895800	Weak transcription	Psoas Muscle	Psoas
3	chr3:81891600-81895800	Weak transcription	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links