Variant report

Variant	rs2684886
Chromosome Location	chr12:51091701-51091702
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51090780..51092871-chr12:51114293..51116509,2	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10506296	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735827	0.84[ASN][1000 genomes]
rs10747592	0.84[ASN][1000 genomes]
rs10783368	0.90[EUR][1000 genomes]
rs10783388	0.84[ASN][1000 genomes]
rs10876048	0.90[EUR][1000 genomes]
rs10876054	0.90[EUR][1000 genomes]
rs10876057	0.82[EUR][1000 genomes]
rs10876082	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10876083	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10876085	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10876088	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10876091	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169551	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11169553	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169556	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12099615	0.86[EUR][1000 genomes]
rs12296379	0.86[EUR][1000 genomes]
rs12320201	0.90[EUR][1000 genomes]
rs13328926	0.86[EUR][1000 genomes]
rs1402693	0.86[EUR][1000 genomes]
rs1521515	0.87[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1521517	0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1561422	0.84[ASN][1000 genomes]
rs17124888	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17124907	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1815010	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1996750	0.86[EUR][1000 genomes]
rs2246840	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2252595	0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2684890	0.90[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2684891	0.90[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2684902	0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2684906	0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2700486	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28414775	0.86[EUR][1000 genomes]
rs28479152	0.86[EUR][1000 genomes]
rs2947617	0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3803181	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3825401	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4129355	0.90[EUR][1000 genomes]
rs4143663	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4306347	0.86[EUR][1000 genomes]
rs4517607	0.86[EUR][1000 genomes]
rs4768887	0.90[EUR][1000 genomes]
rs4768909	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4768915	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4768920	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56753963	0.86[EUR][1000 genomes]
rs56818625	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57328764	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57512759	0.86[EUR][1000 genomes]
rs58301497	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58943330	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59194948	0.86[EUR][1000 genomes]
rs59284993	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59683461	0.86[EUR][1000 genomes]
rs60239257	0.86[EUR][1000 genomes]
rs60494920	0.86[EUR][1000 genomes]
rs60908906	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61926300	0.82[ASN][1000 genomes]
rs6580766	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6580767	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6580768	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6580770	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7131993	0.90[EUR][1000 genomes]
rs7132443	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7135222	0.90[EUR][1000 genomes]
rs7301125	0.90[EUR][1000 genomes]
rs7302749	0.90[EUR][1000 genomes]
rs7303202	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7304793	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7306387	0.86[EUR][1000 genomes]
rs7308872	0.98[ASN][1000 genomes]
rs7310507	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7487150	0.81[ASN][1000 genomes]
rs7487645	0.86[EUR][1000 genomes]
rs7953880	0.86[EUR][1000 genomes]
rs7955310	0.90[EUR][1000 genomes]
rs7959129	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7964642	0.81[ASN][1000 genomes]
rs7969251	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7978443	0.86[EUR][1000 genomes]
rs7979184	0.81[EUR][1000 genomes]
rs7979474	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs829125	0.90[EUR][1000 genomes]
rs865490	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs939631	0.90[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs951591	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9634264	0.90[EUR][1000 genomes]
rs9804759	0.82[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51028400-51092400	Weak transcription	Gastric	stomach
2	chr12:51049200-51108600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:51053200-51092400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr12:51060000-51101200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr12:51060200-51108200	Weak transcription	Stomach Mucosa	stomach
6	chr12:51062600-51091800	Strong transcription	Liver	Liver
7	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr12:51064000-51109800	Strong transcription	Primary B cells from peripheral blood	blood
11	chr12:51064000-51127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr12:51064800-51095800	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr12:51067400-51106200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr12:51067400-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr12:51068200-51095200	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr12:51068200-51106200	Strong transcription	Fetal Thymus	thymus
19	chr12:51068200-51141200	Strong transcription	Placenta	Placenta
20	chr12:51068200-51144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:51068400-51095000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr12:51074200-51106000	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr12:51074600-51109800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr12:51074600-51139600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr12:51075200-51098800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr12:51076600-51102600	Strong transcription	Adipose Nuclei	Adipose
27	chr12:51079200-51094800	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr12:51079200-51094800	Strong transcription	Dnd41	blood
29	chr12:51079200-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr12:51079400-51095200	Strong transcription	Fetal Muscle Leg	muscle
31	chr12:51079600-51094800	Strong transcription	Primary hematopoietic stem cells	blood
32	chr12:51080200-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr12:51083400-51126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr12:51084600-51102400	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr12:51084600-51106000	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr12:51084800-51094800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr12:51084800-51095600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr12:51085200-51092000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr12:51085400-51092400	Weak transcription	Fetal Heart	heart
40	chr12:51085600-51118400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr12:51085800-51091800	Strong transcription	HepG2	liver
42	chr12:51086200-51094800	Strong transcription	Brain Hippocampus Middle	brain
43	chr12:51086200-51094800	Strong transcription	Duodenum Mucosa	Duodenum
44	chr12:51086200-51094800	Strong transcription	Fetal Brain Female	brain
45	chr12:51086200-51095000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr12:51086200-51095400	Strong transcription	Colonic Mucosa	Colon
47	chr12:51086200-51095600	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr12:51086200-51109800	Strong transcription	Fetal Muscle Trunk	muscle
49	chr12:51086200-51140800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr12:51086200-51142600	Strong transcription	Primary T helper cells PMA-I stimulated	--

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