Variant report

Variant	rs2684897
Chromosome Location	chr12:51044939-51044940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51043007..51045103-chr12:51048528..51050679,2	MCF-7	breast:
2	chr12:51037746..51039800-chr12:51044028..51046739,2	MCF-7	breast:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10431532	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10431533	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10732734	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10747582	1.00[EUR][1000 genomes]
rs10783360	1.00[EUR][1000 genomes]
rs10876040	1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10876079	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1096028	1.00[EUR][1000 genomes]
rs1096029	1.00[EUR][1000 genomes]
rs11169464	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12146806	1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300290	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12302810	0.89[AMR][1000 genomes]
rs12302812	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12307085	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12321891	0.83[LWK][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12322206	1.00[ASW][hapmap];0.91[MKK][hapmap]
rs12322925	0.83[LWK][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1464436	1.00[EUR][1000 genomes]
rs1465860	0.89[AFR][1000 genomes]
rs1595597	1.00[EUR][1000 genomes]
rs1642998	1.00[EUR][1000 genomes]
rs1879622	1.00[EUR][1000 genomes]
rs1975351	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2037453	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2252608	0.91[AFR][1000 genomes]
rs2253376	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2359188	1.00[EUR][1000 genomes]
rs2464125	0.97[LWK][hapmap];0.91[MKK][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2468378	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2554869	1.00[EUR][1000 genomes]
rs2684895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684904	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684905	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684907	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684909	1.00[MEX][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700476	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700477	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700481	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700483	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731435	0.87[YRI][hapmap]
rs2731437	0.86[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731438	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731441	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731444	0.82[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731445	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731446	0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731447	1.00[ASW][hapmap];1.00[MEX][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731448	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4238103	1.00[EUR][1000 genomes]
rs4259895	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4293196	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4334109	1.00[EUR][1000 genomes]
rs4491331	1.00[EUR][1000 genomes]
rs4617660	1.00[EUR][1000 genomes]
rs4768896	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768897	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768898	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768908	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4768910	1.00[EUR][1000 genomes]
rs4768919	1.00[EUR][1000 genomes]
rs6421169	1.00[EUR][1000 genomes]
rs6580750	1.00[EUR][1000 genomes]
rs6580758	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580759	0.97[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580762	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7133107	1.00[EUR][1000 genomes]
rs7302222	1.00[EUR][1000 genomes]
rs7309410	1.00[EUR][1000 genomes]
rs7310522	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7312349	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7313783	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7954152	1.00[EUR][1000 genomes]
rs7963866	1.00[EUR][1000 genomes]
rs7966009	1.00[EUR][1000 genomes]
rs7976281	1.00[MEX][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes]
rs829116	1.00[EUR][1000 genomes]
rs829117	1.00[EUR][1000 genomes]
rs829118	1.00[EUR][1000 genomes]
rs829119	1.00[EUR][1000 genomes]
rs829121	1.00[EUR][1000 genomes]
rs829136	1.00[EUR][1000 genomes]
rs829137	1.00[EUR][1000 genomes]
rs829138	1.00[EUR][1000 genomes]
rs939632	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs939634	0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9634263	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9804978	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9943796	1.00[EUR][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51013400-51055200	Weak transcription	Aorta	Aorta
2	chr12:51015600-51075800	Weak transcription	Colonic Mucosa	Colon
3	chr12:51016000-51065000	Weak transcription	Esophagus	oesophagus
4	chr12:51019600-51046400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:51022000-51065200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr12:51022000-51068400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr12:51022400-51055200	Weak transcription	Ovary	ovary
8	chr12:51022600-51054000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr12:51022600-51064600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr12:51028400-51092400	Weak transcription	Gastric	stomach
11	chr12:51030800-51064800	Weak transcription	Spleen	Spleen
12	chr12:51030800-51065000	Weak transcription	Left Ventricle	heart
13	chr12:51031400-51058800	Weak transcription	Small Intestine	intestine
14	chr12:51031400-51064800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr12:51031800-51068200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr12:51032200-51065000	Weak transcription	Fetal Lung	lung
17	chr12:51032200-51069000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr12:51032600-51055000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr12:51034200-51053400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr12:51035600-51053600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr12:51035600-51054000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr12:51035600-51064600	Weak transcription	Lung	lung
23	chr12:51036000-51068200	Weak transcription	Thymus	Thymus
24	chr12:51036200-51045200	Weak transcription	HUVEC	blood vessel
25	chr12:51036200-51052600	Weak transcription	Dnd41	blood
26	chr12:51036200-51052800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr12:51036200-51054000	Weak transcription	Fetal Thymus	thymus
28	chr12:51036200-51054400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr12:51036200-51054400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr12:51036200-51055400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr12:51036200-51057800	Weak transcription	Hela-S3	cervix
32	chr12:51036200-51068200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr12:51036800-51070000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr12:51037000-51058200	Weak transcription	Fetal Intestine Small	intestine
35	chr12:51037200-51054000	Weak transcription	Adipose Nuclei	Adipose
36	chr12:51037600-51053000	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr12:51037600-51054000	Weak transcription	Fetal Muscle Leg	muscle
38	chr12:51038000-51053800	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr12:51038000-51064800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr12:51038200-51053800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr12:51038200-51054000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr12:51038200-51055200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr12:51038200-51055400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr12:51038400-51048200	Weak transcription	HepG2	liver
45	chr12:51038400-51053600	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr12:51038600-51053000	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr12:51038600-51053200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr12:51038600-51054000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr12:51039600-51052800	Weak transcription	Liver	Liver
50	chr12:51039600-51054000	Weak transcription	Placenta	Placenta

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