Variant report

Variant	rs2684905
Chromosome Location	chr12:51038497-51038498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:51035724..51038680-chr12:51048297..51051057,2	K562	blood:
2	chr12:51036681..51039761-chr12:51039769..51043121,4	K562	blood:
3	chr12:50897096..50898748-chr12:51035347..51039565,3	MCF-7	breast:
4	chr12:50905471..50907302-chr12:51036859..51038661,2	K562	blood:
5	chr12:51035107..51037679-chr12:51038091..51041235,4	MCF-7	breast:
6	chr12:51037746..51039800-chr12:51044028..51046739,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200183	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10431532	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10431533	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10732734	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10747582	1.00[EUR][1000 genomes]
rs10783360	1.00[EUR][1000 genomes]
rs10876040	1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10876079	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1096028	1.00[EUR][1000 genomes]
rs1096029	1.00[EUR][1000 genomes]
rs11169464	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12146806	1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300290	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12302810	0.89[AMR][1000 genomes]
rs12302812	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12307085	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12321891	1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12322206	1.00[ASW][hapmap];0.88[MKK][hapmap]
rs12322925	1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12367373	1.00[EUR][1000 genomes]
rs1464436	1.00[EUR][1000 genomes]
rs1465860	0.89[AFR][1000 genomes]
rs1595597	1.00[EUR][1000 genomes]
rs1642998	1.00[EUR][1000 genomes]
rs1879622	1.00[EUR][1000 genomes]
rs1975351	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2037453	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2252608	0.91[AFR][1000 genomes]
rs2253376	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2359188	1.00[EUR][1000 genomes]
rs2464125	0.94[LWK][hapmap];0.88[MKK][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2468378	1.00[ASW][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2554869	1.00[EUR][1000 genomes]
rs2684895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684897	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684904	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684907	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684909	1.00[MEX][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700476	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700477	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700481	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700483	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731435	0.87[YRI][hapmap]
rs2731437	0.86[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731438	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731441	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731444	0.82[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731445	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731446	0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731447	1.00[ASW][hapmap];1.00[MEX][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731448	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4238103	1.00[EUR][1000 genomes]
rs4259895	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4293196	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4334109	1.00[EUR][1000 genomes]
rs4491331	1.00[EUR][1000 genomes]
rs4617660	1.00[EUR][1000 genomes]
rs4768896	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768897	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768898	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768908	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4768910	1.00[EUR][1000 genomes]
rs4768919	1.00[EUR][1000 genomes]
rs6421169	1.00[EUR][1000 genomes]
rs6580750	1.00[EUR][1000 genomes]
rs6580758	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580759	0.94[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580762	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7133107	1.00[EUR][1000 genomes]
rs7302222	1.00[EUR][1000 genomes]
rs7309410	1.00[EUR][1000 genomes]
rs7310522	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7312349	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7313783	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7314198	1.00[EUR][1000 genomes]
rs7954152	1.00[EUR][1000 genomes]
rs7963866	1.00[EUR][1000 genomes]
rs7966009	1.00[EUR][1000 genomes]
rs7976281	1.00[MEX][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes]
rs829116	1.00[EUR][1000 genomes]
rs829117	1.00[EUR][1000 genomes]
rs829118	1.00[EUR][1000 genomes]
rs829119	1.00[EUR][1000 genomes]
rs829121	1.00[EUR][1000 genomes]
rs829136	1.00[EUR][1000 genomes]
rs829137	1.00[EUR][1000 genomes]
rs829138	1.00[EUR][1000 genomes]
rs939632	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs939634	0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9634263	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9804978	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9943796	1.00[EUR][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51013400-51055200	Weak transcription	Aorta	Aorta
2	chr12:51014600-51041000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:51015600-51075800	Weak transcription	Colonic Mucosa	Colon
4	chr12:51016000-51065000	Weak transcription	Esophagus	oesophagus
5	chr12:51016600-51039400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:51017800-51042800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr12:51019600-51046400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr12:51021000-51039800	Weak transcription	NHLF	lung
9	chr12:51021600-51041000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr12:51021800-51041000	Weak transcription	Fetal Kidney	kidney
11	chr12:51021800-51041400	Weak transcription	Right Ventricle	heart
12	chr12:51022000-51065200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr12:51022000-51068400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr12:51022400-51055200	Weak transcription	Ovary	ovary
15	chr12:51022600-51054000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr12:51022600-51064600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr12:51028400-51092400	Weak transcription	Gastric	stomach
18	chr12:51030800-51064800	Weak transcription	Spleen	Spleen
19	chr12:51030800-51065000	Weak transcription	Left Ventricle	heart
20	chr12:51031200-51040600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr12:51031200-51041000	Weak transcription	Brain Germinal Matrix	brain
22	chr12:51031400-51042800	Weak transcription	Fetal Brain Female	brain
23	chr12:51031400-51058800	Weak transcription	Small Intestine	intestine
24	chr12:51031400-51064800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr12:51031800-51068200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr12:51032000-51041200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr12:51032000-51043200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr12:51032200-51040400	Weak transcription	Fetal Heart	heart
29	chr12:51032200-51041000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr12:51032200-51065000	Weak transcription	Fetal Lung	lung
31	chr12:51032200-51069000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr12:51032600-51055000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr12:51033800-51039600	Strong transcription	Primary B cells from cord blood	blood
34	chr12:51034200-51053400	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr12:51034400-51038600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr12:51034400-51039600	Strong transcription	Placenta	Placenta
37	chr12:51034600-51039600	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr12:51034800-51040800	Weak transcription	GM12878-XiMat	blood
39	chr12:51035200-51038600	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr12:51035200-51039600	Strong transcription	Liver	Liver
41	chr12:51035400-51039000	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr12:51035600-51040400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr12:51035600-51053600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr12:51035600-51054000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr12:51035600-51064600	Weak transcription	Lung	lung
46	chr12:51036000-51040600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr12:51036000-51040600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr12:51036000-51068200	Weak transcription	Thymus	Thymus
49	chr12:51036200-51040800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr12:51036200-51041000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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