Variant report

Variant	rs2684907
Chromosome Location	chr12:51066802-51066803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:50898370..50900910-chr12:51066059..51067676,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066084	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10431532	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10431533	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10732734	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10747582	1.00[EUR][1000 genomes]
rs10783360	1.00[EUR][1000 genomes]
rs10876040	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10876079	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1096028	1.00[EUR][1000 genomes]
rs1096029	1.00[EUR][1000 genomes]
rs11169464	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12146806	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12300290	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12302810	0.89[AMR][1000 genomes]
rs12302812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12307085	0.87[AMR][1000 genomes]
rs12321891	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12322925	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1464436	1.00[EUR][1000 genomes]
rs1465860	0.93[AFR][1000 genomes]
rs1595597	1.00[EUR][1000 genomes]
rs1642998	1.00[EUR][1000 genomes]
rs1879622	1.00[EUR][1000 genomes]
rs1975351	0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2037453	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2252608	0.82[AFR][1000 genomes]
rs2253376	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2359188	1.00[EUR][1000 genomes]
rs2464125	0.92[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2468378	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2554869	1.00[EUR][1000 genomes]
rs2684895	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684896	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684897	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684904	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684905	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684909	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700476	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700477	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700481	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700483	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731435	0.87[YRI][hapmap]
rs2731437	0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731438	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731444	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731445	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731446	0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731447	0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731448	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4238103	1.00[EUR][1000 genomes]
rs4259895	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4293196	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4334109	1.00[EUR][1000 genomes]
rs4491331	1.00[EUR][1000 genomes]
rs4617660	1.00[EUR][1000 genomes]
rs4768896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768897	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768898	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768908	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4768910	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4768919	1.00[EUR][1000 genomes]
rs6421169	1.00[EUR][1000 genomes]
rs6580758	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580759	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580762	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7310522	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7312349	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7313783	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7954152	1.00[EUR][1000 genomes]
rs7966009	1.00[EUR][1000 genomes]
rs7976281	0.87[AMR][1000 genomes]
rs829116	1.00[EUR][1000 genomes]
rs829117	1.00[EUR][1000 genomes]
rs829118	1.00[EUR][1000 genomes]
rs829119	1.00[EUR][1000 genomes]
rs829121	1.00[EUR][1000 genomes]
rs829136	1.00[EUR][1000 genomes]
rs829137	1.00[EUR][1000 genomes]
rs829138	1.00[EUR][1000 genomes]
rs939632	0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs939634	0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9634263	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9804978	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9943796	1.00[EUR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51015600-51075800	Weak transcription	Colonic Mucosa	Colon
2	chr12:51022000-51068400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr12:51028400-51092400	Weak transcription	Gastric	stomach
4	chr12:51031800-51068200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr12:51032200-51069000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:51036000-51068200	Weak transcription	Thymus	Thymus
7	chr12:51036200-51068200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr12:51036800-51070000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr12:51041200-51067200	Weak transcription	Fetal Stomach	stomach
10	chr12:51041400-51068000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr12:51041800-51091400	Weak transcription	Pancreas	Pancrea
12	chr12:51044000-51070800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr12:51045600-51067200	Weak transcription	HUVEC	blood vessel
14	chr12:51049200-51108600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr12:51051200-51068200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr12:51051600-51070400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr12:51051800-51068400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr12:51052200-51071600	Weak transcription	Osteobl	bone
19	chr12:51052400-51068800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr12:51053000-51086200	Weak transcription	Psoas Muscle	Psoas
21	chr12:51053200-51070000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr12:51053200-51092400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr12:51053800-51089200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr12:51054600-51071600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr12:51056400-51068400	Weak transcription	Fetal Brain Male	brain
26	chr12:51056400-51079200	Weak transcription	HSMM	muscle
27	chr12:51056400-51079600	Weak transcription	Fetal Kidney	kidney
28	chr12:51056600-51079400	Weak transcription	Fetal Heart	heart
29	chr12:51056800-51069000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr12:51057000-51089600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr12:51058400-51068000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr12:51058600-51070000	Weak transcription	Hela-S3	cervix
33	chr12:51058600-51089000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr12:51058800-51068200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr12:51059000-51069400	Weak transcription	NH-A	brain
36	chr12:51059200-51067600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr12:51059200-51068400	Weak transcription	A549	lung
38	chr12:51059200-51068600	Weak transcription	Brain Germinal Matrix	brain
39	chr12:51059400-51089600	Weak transcription	Small Intestine	intestine
40	chr12:51060000-51101200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr12:51060200-51108200	Weak transcription	Stomach Mucosa	stomach
42	chr12:51060600-51071800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr12:51061200-51080200	Weak transcription	Right Ventricle	heart
44	chr12:51062000-51068200	Weak transcription	Brain Anterior Caudate	brain
45	chr12:51062000-51068800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr12:51062200-51080400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr12:51062400-51068000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr12:51062600-51091800	Strong transcription	Liver	Liver
49	chr12:51063000-51079600	Weak transcription	Brain Angular Gyrus	brain
50	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood

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