Variant report

Variant	rs2684908
Chromosome Location	chr12:51065617-51065618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51062193..51066616-chr12:51069507..51072136,4	K562	blood:

Extended variants
information (count: 110 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs1003033	0.88[CEU][hapmap]
rs10431535	0.82[EUR][1000 genomes]
rs10444547	0.82[EUR][1000 genomes]
rs10459233	0.90[CEU][hapmap]
rs10459234	0.82[EUR][1000 genomes]
rs10459235	0.85[EUR][1000 genomes]
rs10506294	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs10506295	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs10747583	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10747587	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs10783372	0.89[CEU][hapmap]
rs10783373	0.90[CEU][hapmap]
rs10783375	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10783381	0.81[EUR][1000 genomes]
rs10783382	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs10783383	0.85[EUR][1000 genomes]
rs10783384	0.83[EUR][1000 genomes]
rs10876047	0.90[CEU][hapmap]
rs10876051	0.90[CEU][hapmap]
rs10876052	0.90[CEU][hapmap]
rs10876053	0.90[CEU][hapmap]
rs10876055	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10876056	0.90[CEU][hapmap]
rs10876065	0.90[CEU][hapmap]
rs10876066	0.82[ASN][1000 genomes]
rs10876069	0.90[ASN][1000 genomes]
rs10876070	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs10876071	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs10876072	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs10876073	0.82[EUR][1000 genomes]
rs10876075	0.83[EUR][1000 genomes]
rs10876076	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs11169479	0.90[CEU][hapmap]
rs11169481	0.90[CEU][hapmap]
rs11169484	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11169493	0.90[CEU][hapmap]
rs11169505	0.80[EUR][1000 genomes]
rs11169506	0.88[CHB][hapmap]
rs11169507	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs11169515	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs11169523	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11169524	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs11169528	0.85[EUR][1000 genomes]
rs11169532	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs11169537	0.83[EUR][1000 genomes]
rs11613488	0.90[CEU][hapmap]
rs11615933	0.85[EUR][1000 genomes]
rs12231309	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs12231317	0.83[EUR][1000 genomes]
rs12307178	0.82[ASN][1000 genomes]
rs12425362	0.82[ASN][1000 genomes]
rs12427378	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12580051	0.83[EUR][1000 genomes]
rs12809086	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs12818741	0.84[CHB][hapmap]
rs1316442	0.95[ASN][1000 genomes]
rs1316607	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13378012	0.84[CHB][hapmap]
rs17124930	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs1967576	0.92[ASN][1000 genomes]
rs2090851	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090852	0.88[CHB][hapmap];0.80[ASN][1000 genomes]
rs2139930	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs2243571	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2264734	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2280503	0.84[CHB][hapmap];0.80[CHD][hapmap]
rs2700478	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34553264	0.80[ASN][1000 genomes]
rs3742062	0.84[CHB][hapmap]
rs3935138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs3935870	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs4131769	0.90[CEU][hapmap]
rs4238106	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs4238108	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs4388959	0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4617661	0.82[EUR][1000 genomes]
rs4768847	0.82[EUR][1000 genomes]
rs4768853	0.90[CEU][hapmap]
rs4768858	0.83[EUR][1000 genomes]
rs4768888	0.90[CEU][hapmap]
rs4768899	0.81[EUR][1000 genomes]
rs4768906	0.84[EUR][1000 genomes]
rs4768907	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs4768912	0.83[EUR][1000 genomes]
rs4768913	0.83[EUR][1000 genomes]
rs4768914	0.84[CEU][hapmap]
rs61926275	0.85[EUR][1000 genomes]
rs6580756	0.82[EUR][1000 genomes]
rs6580761	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67092086	0.85[EUR][1000 genomes]
rs7133160	0.97[ASN][1000 genomes]
rs7134976	0.81[EUR][1000 genomes]
rs7137845	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs7138604	0.90[CEU][hapmap]
rs7298661	0.92[ASN][1000 genomes]
rs7298665	0.96[ASN][1000 genomes]
rs7302435	0.96[ASN][1000 genomes]
rs7305375	0.90[CEU][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7307419	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs7316864	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs7397999	0.85[EUR][1000 genomes]
rs7487429	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7956591	0.88[CEU][hapmap]
rs7965652	0.95[ASN][1000 genomes]
rs876078	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs876079	0.83[EUR][1000 genomes]
rs876080	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs952318	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs9788075	0.92[ASN][1000 genomes]
rs9788159	0.83[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2684908	ARID2	cis	cerebellum	SCAN
rs2684908	DIP2B	cis	multi-tissue	Pritchard
rs2684908	DIP2B	cis	Lymphoblastoid	GTEx

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51015600-51075800	Weak transcription	Colonic Mucosa	Colon
2	chr12:51022000-51068400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr12:51028400-51092400	Weak transcription	Gastric	stomach
4	chr12:51031800-51068200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr12:51032200-51069000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:51036000-51068200	Weak transcription	Thymus	Thymus
7	chr12:51036200-51068200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr12:51036800-51070000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr12:51041200-51067200	Weak transcription	Fetal Stomach	stomach
10	chr12:51041400-51068000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr12:51041800-51066200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:51041800-51091400	Weak transcription	Pancreas	Pancrea
13	chr12:51044000-51070800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr12:51045600-51067200	Weak transcription	HUVEC	blood vessel
15	chr12:51049200-51108600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr12:51051200-51068200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr12:51051600-51070400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr12:51051800-51068400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr12:51052200-51071600	Weak transcription	Osteobl	bone
20	chr12:51052400-51068800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr12:51053000-51086200	Weak transcription	Psoas Muscle	Psoas
22	chr12:51053200-51070000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr12:51053200-51092400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr12:51053800-51089200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr12:51054600-51071600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr12:51056400-51068400	Weak transcription	Fetal Brain Male	brain
27	chr12:51056400-51079200	Weak transcription	HSMM	muscle
28	chr12:51056400-51079600	Weak transcription	Fetal Kidney	kidney
29	chr12:51056600-51079400	Weak transcription	Fetal Heart	heart
30	chr12:51056800-51069000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr12:51057000-51089600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr12:51058400-51068000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr12:51058600-51070000	Weak transcription	Hela-S3	cervix
34	chr12:51058600-51089000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr12:51058800-51068200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr12:51059000-51069400	Weak transcription	NH-A	brain
37	chr12:51059200-51067600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr12:51059200-51068400	Weak transcription	A549	lung
39	chr12:51059200-51068600	Weak transcription	Brain Germinal Matrix	brain
40	chr12:51059400-51089600	Weak transcription	Small Intestine	intestine
41	chr12:51060000-51101200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr12:51060200-51108200	Weak transcription	Stomach Mucosa	stomach
43	chr12:51060600-51071800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr12:51061200-51080200	Weak transcription	Right Ventricle	heart
45	chr12:51062000-51068200	Weak transcription	Brain Anterior Caudate	brain
46	chr12:51062000-51068800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr12:51062200-51080400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr12:51062400-51068000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr12:51062600-51091800	Strong transcription	Liver	Liver
50	chr12:51063000-51079600	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links