Variant report

Variant	rs2688414
Chromosome Location	chr3:23078904-23078905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23059562..23061328-chr3:23078104..23079690,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1094607	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs115374	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1355740	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1817581	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1849478	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2171030	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2359367	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs518725	0.82[EUR][1000 genomes]
rs582089	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs603056	0.85[EUR][1000 genomes]
rs6550719	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs683436	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23071600-23080400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:23077400-23079000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:23077400-23081400	Enhancers	Fetal Lung	lung
4	chr3:23077600-23079200	Enhancers	Primary hematopoietic stem cells	blood
5	chr3:23077600-23079200	Enhancers	Fetal Heart	heart
6	chr3:23077800-23079000	Enhancers	Adipose Nuclei	Adipose
7	chr3:23077800-23079000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr3:23077800-23079000	Enhancers	NHLF	lung
9	chr3:23077800-23080000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:23077800-23080400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:23077800-23080600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:23077800-23081000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:23078000-23080200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:23078000-23080600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:23078000-23082800	Weak transcription	Esophagus	oesophagus
16	chr3:23078000-23083400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:23078000-23083400	Weak transcription	HMEC	breast
18	chr3:23078000-23083800	Weak transcription	Left Ventricle	heart
19	chr3:23078200-23079000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:23078400-23083400	Weak transcription	NHEK	skin
21	chr3:23078600-23079000	Enhancers	H9 Cell Line	embryonic stem cell
22	chr3:23078600-23079000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:23078600-23079000	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr3:23078600-23079000	Flanking Active TSS	HSMMtube	muscle
25	chr3:23078600-23079200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:23078600-23079400	Enhancers	HSMM	muscle
27	chr3:23078800-23079000	Enhancers	Aorta	Aorta
28	chr3:23078800-23080000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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