Variant report

Variant	rs2691081
Chromosome Location	chr3:81858615-81858616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10084705	0.82[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap]
rs1404296	0.84[EUR][1000 genomes]
rs2315966	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2680271	0.82[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2691082	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28668209	0.82[EUR][1000 genomes]
rs3821550	0.82[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap]
rs6804453	0.82[EUR][1000 genomes]
rs9813155	0.83[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap]
rs9826933	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81852400-81872200	Weak transcription	Left Ventricle	heart
2	chr3:81857400-81860200	Enhancers	Liver	Liver
3	chr3:81857800-81859200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:81858000-81859000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:81858200-81858800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:81858200-81859200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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