Variant report
| Variant | rs2691082 |
|---|---|
| Chromosome Location | chr3:81857076-81857077 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs13314900 | 0.84[EUR][1000 genomes] |
| rs1851922 | 0.82[EUR][1000 genomes] |
| rs1973802 | 0.83[EUR][1000 genomes] |
| rs2315966 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2680275 | 0.81[EUR][1000 genomes] |
| rs2691081 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs57555994 | 0.81[EUR][1000 genomes] |
| rs59419728 | 0.81[EUR][1000 genomes] |
| rs62267150 | 0.85[EUR][1000 genomes] |
| rs6768673 | 0.82[EUR][1000 genomes] |
| rs6791629 | 0.83[EUR][1000 genomes] |
| rs6798822 | 0.81[EUR][1000 genomes] |
| rs6804697 | 0.81[EUR][1000 genomes] |
| rs7634830 | 0.81[EUR][1000 genomes] |
| rs9813371 | 0.85[EUR][1000 genomes] |
| rs9825400 | 0.81[EUR][1000 genomes] |
| rs9831301 | 0.85[EUR][1000 genomes] |
| rs9831360 | 0.81[EUR][1000 genomes] |
| rs9851559 | 0.85[EUR][1000 genomes] |
| rs9874754 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949545 | chr3:81523898-81893929 | Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv999992 | chr3:81693662-82015969 | Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 3 | nsv536605 | chr3:81693662-82015969 | Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:81852400-81872200 | Weak transcription | Left Ventricle | heart |
