Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11710970	0.86[JPT][hapmap]
rs11711331	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs12495343	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12635671	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1404297	0.82[EUR][1000 genomes]
rs1973800	0.82[EUR][1000 genomes]
rs1973801	0.82[EUR][1000 genomes]
rs1997002	0.82[EUR][1000 genomes]
rs2244294	0.82[EUR][1000 genomes]
rs2252530	0.81[EUR][1000 genomes]
rs2594558	0.85[EUR][1000 genomes]
rs2594562	0.86[EUR][1000 genomes]
rs2680245	0.85[EUR][1000 genomes]
rs2680246	0.85[EUR][1000 genomes]
rs2680260	0.83[EUR][1000 genomes]
rs2680274	0.83[EUR][1000 genomes]
rs2680277	0.86[EUR][1000 genomes]
rs2680280	0.81[EUR][1000 genomes]
rs2691077	0.83[EUR][1000 genomes]
rs2691078	0.82[EUR][1000 genomes]
rs2691079	0.82[EUR][1000 genomes]
rs2691080	0.82[EUR][1000 genomes]
rs2691083	0.82[EUR][1000 genomes]
rs2691085	0.83[EUR][1000 genomes]
rs2691093	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3772896	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs3772899	0.83[JPT][hapmap]
rs3772902	0.83[JPT][hapmap]
rs3821548	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs3849570	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs3849571	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs6803932	0.86[EUR][1000 genomes]
rs7620240	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs950904	0.82[EUR][1000 genomes]
rs9832088	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81837800-81840200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:81839400-81840000	Enhancers	Psoas Muscle	Psoas
3	chr3:81839600-81840200	Enhancers	Fetal Heart	heart

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